can I provide Orthofinder with my own species tree?

[bhdobrin]

Hello, thank you for making this GREAT program. I'm in the midst of my first run and expect the orthofinder portion to take some time. I believe I could speed up this part marginally if GENESPACE allowed me to pass orthofinder a species tree, but I don't see tree parameter among the init_genespace parameters. Any way to do this? In standalone orthofinder, the -s parameter takes a tree. Thanks!

[bhdobrin]

I searched the issues a bit (after remembering it helps to remove the "open" filter) and I see the question of running orthofinder separately has been asked before and answered. Since I can generate my own orthofinder results using parameters I prefer, that seems to answer my question, too.