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OrthoFinder check fails with version 3.0.1b1 #173

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odethier-ulb opened this issue Nov 18, 2024 · 0 comments
Open

OrthoFinder check fails with version 3.0.1b1 #173

odethier-ulb opened this issue Nov 18, 2024 · 0 comments

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@odethier-ulb
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Hello,

I have the error following error when trying to run GENESPACE with the latest OrthoFinder from bioconda: 3.0.1b1 :

Warning message:
In get_orthofinderVersion(path2orthofinder) : NAs introduced by coercion
...
Could not find a valid path to the orthofinder program from R

The issue seems to be in utils.get_orthofinderVersion where the conversion to numeric fails at line 827 with the patch version (1b1):

as.numeric(sprintf("%s.%s%s", vern[1], vern[2], vern[3])) ) 

Regards,

Olivier

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