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phipo.obo
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phipo.obo
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format-version: 1.2
data-version: phipo/releases/2018-05-16/phipo.owl
ontology: http://www.purl.obolibrary.org/obo/phipo.owl
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(Class(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000001>))\nDeclaration(Class(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000002>))\nDeclaration(Class(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000003>))\n############################\n# Classes\n############################\n\n# Class: <http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000001> (disease formation phenotype)\n\nSubClassOf(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000001> owl:Thing)\n\n# Class: <http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000002> (pathogen phenotype)\n\nSubClassOf(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000002> owl:Thing)\n\n# Class: <http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000003> (host phenotype)\n\nSubClassOf(<http://www.purl.obolibrary.org/obo/phipo.owl/PHIPO_0000003> owl:Thing)\n\n\n)
[Term]
id: PHIPO:0000001
name: disease formation phenotype
namespace: disease formation phenotype
def: "TO UPDATE_Any of the set of observable characteristics of an organism resulting from the interaction of its genotype with the environment including any other organisms" []
comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.
subset: qc_do_not_annotate
subset: qc_do_not_manually_annotate
created_by: alaynecuzick
creation_date: 2018-05-02T11:20:17Z
[Term]
id: PHIPO:0000002
name: pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-02T11:20:59Z
[Term]
id: PHIPO:0000003
name: host phenotype
def: "testing" []
created_by: alaynecuzick
creation_date: 2018-05-02T11:21:13Z
[Term]
id: PHIPO:0000004
name: normal pathogenicity
synonym: "unaffected pathogenicity" EXACT []
is_a: PHIPO:0000006 ! pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T12:38:43Z
[Term]
id: PHIPO:0000005
name: abnormal pathogenicity
is_a: PHIPO:0000006 ! pathogenicity phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T12:39:00Z
[Term]
id: PHIPO:0000006
name: pathogenicity phenotype
is_a: PHIPO:0000001 ! disease formation phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T12:39:55Z
[Term]
id: PHIPO:0000007
name: normal pathogenic phenotype
is_a: PHIPO:0000004 ! normal pathogenicity
created_by: alaynecuzick
creation_date: 2018-05-04T12:42:00Z
[Term]
id: PHIPO:0000008
name: normal non pathogenic phenotype
is_a: PHIPO:0000004 ! normal pathogenicity
created_by: alaynecuzick
creation_date: 2018-05-04T12:42:16Z
[Term]
id: PHIPO:0000009
name: gain of pathogenicity
synonym: "abnormal pathogenic phenotype" EXACT []
is_a: PHIPO:0000005 ! abnormal pathogenicity
created_by: alaynecuzick
creation_date: 2018-05-04T12:45:12Z
[Term]
id: PHIPO:0000010
name: loss of pathogenicity
synonym: "abnormal non pathogenic phenotype" EXACT []
is_a: PHIPO:0000005 ! abnormal pathogenicity
created_by: alaynecuzick
creation_date: 2018-05-04T12:45:31Z
[Term]
id: PHIPO:0000011
name: virulence phenotype
is_a: PHIPO:0000001 ! disease formation phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:02:03Z
[Term]
id: PHIPO:0000012
name: normal virulence
synonym: "unaffected virulence" EXACT []
is_a: PHIPO:0000011 ! virulence phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:02:23Z
[Term]
id: PHIPO:0000013
name: abnormal virulence
is_a: PHIPO:0000011 ! virulence phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:02:39Z
[Term]
id: PHIPO:0000014
name: increased virulence
is_a: PHIPO:0000013 ! abnormal virulence
created_by: alaynecuzick
creation_date: 2018-05-04T13:07:31Z
[Term]
id: PHIPO:0000015
name: reduced virulence
synonym: "decreased virulence" EXACT []
is_a: PHIPO:0000013 ! abnormal virulence
created_by: alaynecuzick
creation_date: 2018-05-04T13:08:10Z
[Term]
id: PHIPO:0000016
name: normal pathogen phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:10:48Z
[Term]
id: PHIPO:0000017
name: abnormal pathogen phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:11:04Z
[Term]
id: PHIPO:0000018
name: sensitive to chemical
is_a: PHIPO:0000016 ! normal pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:12:20Z
[Term]
id: PHIPO:0000019
name: lethal
is_a: PHIPO:0000017 ! abnormal pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:12:47Z
[Term]
id: PHIPO:0000020
name: abnormal chemical target phenotype
is_a: PHIPO:0000017 ! abnormal pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:13:42Z
[Term]
id: PHIPO:0000021
name: increased sensitivity to chemical
is_a: PHIPO:0000020 ! abnormal chemical target phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:15:05Z
[Term]
id: PHIPO:0000022
name: resistance to chemical
is_a: PHIPO:0000020 ! abnormal chemical target phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:16:06Z
[Term]
id: PHIPO:0000023
name: abnormal penetration assay phenotype
is_a: PHIPO:0000002 ! pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:16:54Z
[Term]
id: PHIPO:0000024
name: normal penetration assay phenotype
is_a: PHIPO:0000016 ! normal pathogen phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:17:08Z
[Term]
id: PHIPO:0000025
name: normal mating phenotype prior to penetration
is_a: PHIPO:0000024 ! normal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:17:46Z
[Term]
id: PHIPO:0000026
name: normal penetration
is_a: PHIPO:0000024 ! normal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:18:03Z
[Term]
id: PHIPO:0000027
name: normal post penetration
is_a: PHIPO:0000024 ! normal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:19:13Z
[Term]
id: PHIPO:0000028
name: normal pre penetration
is_a: PHIPO:0000024 ! normal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:19:44Z
[Term]
id: PHIPO:0000029
name: abnormal mating phenotype prior to penetration
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:22:14Z
[Term]
id: PHIPO:0000030
name: abnormal penetration
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:22:31Z
[Term]
id: PHIPO:0000031
name: abnormal post penetration
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:22:52Z
[Term]
id: PHIPO:0000032
name: abnormal pre penetration
is_a: PHIPO:0000023 ! abnormal penetration assay phenotype
created_by: alaynecuzick
creation_date: 2018-05-04T13:23:06Z