diff --git a/.github/automatic-issues/add-feedback-method.md b/.github/automatic-issues/add-feedback-method.md
index 4e9b0150..a69be417 100644
--- a/.github/automatic-issues/add-feedback-method.md
+++ b/.github/automatic-issues/add-feedback-method.md
@@ -1,4 +1,8 @@
To help users report issues or areas of improvement for your course, you should provide a clear method of feedback for your users to route their concerns through.
-[Read this chapter from an OTTR-made course about how to obtain user feedback](https://jhudatascience.org/Documentation_and_Usability/obtaining-user-feedback.html).
+- [ ] [Read this chapter from an OTTR-made course about how to obtain user feedback](https://jhudatascience.org/Documentation_and_Usability/obtaining-user-feedback.html).
+
+It's also a good idea to collect passive feedback via Google Analytics.
+
+- [ ] [Read our guide to Google Analytics here](https://www.ottrproject.org/more_features.html#google-analytics).
diff --git a/.github/course_README_template.md b/.github/course_README_template.md
new file mode 100644
index 00000000..1c9ccdf7
--- /dev/null
+++ b/.github/course_README_template.md
@@ -0,0 +1,24 @@
+# {Course Name}
+
+This course was created from [this GitHub template](https://github.com/jhudsl/OTTR_Template).
+
+You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub.}
+
+If you would like to contribute to this course material, take a look at the [OTTR documentation](https://www.ottrproject.org/).
+
+## About this course
+
+This course introduces {info on what this course introduces}
+
+## Learning Objectives
+
+This course will teach learners to:
+
+- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here}
+- {More learning objectives}
+
+## Encountering problems?
+
+If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.
+
+
All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.
diff --git a/.github/sync.yml b/.github/sync.yml
index 40b46a7b..de89e922 100755
--- a/.github/sync.yml
+++ b/.github/sync.yml
@@ -29,7 +29,6 @@ group:
jhudsl/Documentation_and_Usability
jhudsl/Informatics_Research_Leadership
jhudsl/Data_Management_for_Cancer_Research
- jhudsl/Ethical_Data_Handling_for_Cancer_Research
jhudsl/Computing_for_Cancer_Informatics
jhudsl/Adv_Reproducibility_in_Cancer_Informatics
jhudsl/Reproducibility_in_Cancer_Informatics
@@ -47,13 +46,20 @@ group:
fhdsl/NIH_Data_Sharing
fhdsl/FH_Cluster_Guide
fhdsl/Using_Leanpub
- fhdsl/Overleaf_Tutorial
+ fhdsl/Ethical_Data_Handling_for_Cancer_Research
+ fhdsl/Overleaf_and_LaTeX_for_Scientific_Articles
fhdsl/Design_of_Data_Analysis
fhdsl/Tools_for_Reproducible_Workflows_in_R
fhdsl/Introduction_to_reproducible_research
mccoy-lab/hgv_modules
griffithlab/pVACtools_Intro_Course
griffithlab/CIVIC_SVI_Course
+ PracticalGenomics/cogaps-on-sciserver
+ fhdsl/AI_for_software
+ griffithlab/Immuno_Workflow_Course
+ fhdsl/S1_Intro_to_R
+ fhdsl/S1_Intro_to_Command_Line
+ fhdsl/S1_Intro_to_Git_GitHub
###ADD NEW REPO HERE following the format above#
@@ -109,3 +115,25 @@ group:
dest: style-sets/fhdasl/
repos: |
jhudsl/AnVIL_Template
+
+ - files:
+ - source: config_automation.yml
+ dest: config_automation.yml
+ - source: .github/workflows/
+ dest: .github/workflows/
+ deleteOrphaned: true
+ - source: .github/switch_sync_repo.R
+ dest: .github/switch_sync_repo.R
+ - source: .github/automatic-issues/
+ dest: .github/automatic-issues/
+ - source: assets/box_images/
+ dest: assets/box_images/
+ - source: assets/style.css
+ dest: assets/style.css
+ - source: assets/toc_close.css
+ dest: assets/toc_close.css
+ - source: scripts/
+ dest: scripts/
+ deleteOrphaned: true
+ repos: |
+ C-MOOR/C-MOOR_Template
diff --git a/.github/workflows/render-all.yml b/.github/workflows/render-all.yml
index 083817ac..b9b19728 100644
--- a/.github/workflows/render-all.yml
+++ b/.github/workflows/render-all.yml
@@ -10,6 +10,7 @@ on:
paths:
- '**.Rmd'
- assets/*
+ - quizzes/*
jobs:
diff --git a/.github/workflows/starting-course.yml b/.github/workflows/starting-course.yml
index d1683f28..5ded0b20 100644
--- a/.github/workflows/starting-course.yml
+++ b/.github/workflows/starting-course.yml
@@ -30,6 +30,7 @@ jobs:
- name: Cleanup
run: |
# Cleanup
+ mv .github/course_README_template.md README.md
rm -rf \
.github/workflows/report-maker.yml \
.github/workflows/send-updates.yml \
diff --git a/README.md b/README.md
index cf31a254..04db84a6 100644
--- a/README.md
+++ b/README.md
@@ -1,5 +1,3 @@
-
-
## Open-source Tools for Training Resources - OTTR
Go to [ottrproject.org](https://www.ottrproject.org/) to get started! :tada:
@@ -29,34 +27,7 @@ _This template and guide helps you_:
## To Get Started
- Go to the [ottrproject.org](https://www.ottrproject.org/).
- Check out the [rendered version of the template](https://jhudatascience.org/OTTR_Template/).
+- Check out our [course on using Leanpub](https://hutchdatascience.org/Using_Leanpub/index.html) for help publishing on this platform.
- Please take a look at the [code of conduct](./code_of_conduct.md).
- If you encounter any problems or have ideas for improvements to this template repository or this getting started guide, please [file an issue here](https://github.com/jhudsl/OTTR_Template/issues/new/choose)! Your feedback is very much appreciated.
-
-
-# {Course Name}
-
-[![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml)
-
-This course was created from [this GitHub template](https://github.com/jhudsl/OTTR_Template).
-
-You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub.}
-
-If you would like to contribute to this course material, take a look at the [getting started GitHub wiki pages](https://github.com/jhudsl/OTTR_Template/wiki).
-
-## About this course
-
-This course introduces {info on what this course introduces}
-
-## Learning Objectives
-
-This course will teach learners to:
-
-- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here}
-- {More learning objectives}
-
-## Encountering problems?
-
-If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.
-
-
All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.