diff --git a/scripts/slurm_ismap_sg.py b/scripts/slurm_ismap_sg.py index 85eb01d..2e7d20d 100644 --- a/scripts/slurm_ismap_sg.py +++ b/scripts/slurm_ismap_sg.py @@ -160,11 +160,11 @@ def main(): cmd += '\n#SBATCH --mem-per-cpu=' + args.memory cmd += '\n#SBATCH --time=' + args.walltime cmd += '\ncd ' + args.rundir - cmd += '\nmodule load Python/2.7.10-vlsci_intel-2015.08.25' + cmd += '\nmodule load Python/2.7.10-vlsci_intel-2015.08.25-SG' cmd += '\nmodule load BWA/0.7.15-iccifort-2015.2.164-GCC-4.9.2' - #cmd += '\nmodule load SAMtools/1.2-iccifort-2015.2.164-GCC-4.9.2-HTSlib-1.2.1' + cmd += '\nmodule load SAMtools/1.2-iccifort-2015.2.164-GCC-4.9.2-HTSlib-1.2.1' #cmd += '\nmodule load SAMtools/0.1.19-vlsci_intel-2015.08.25' - cmd += '\nmodule load SAMtools/0.1.18-iccifort-2015.2.164-GCC-4.9.2' + #cmd += '\nmodule load SAMtools/0.1.18-iccifort-2015.2.164-GCC-4.9.2' cmd += '\nmodule load BLAST+/2.2.30-vlsci_intel-2015.08.25-Python-2.7.10' cmd += '\nmodule load BEDTools/2.25.0-iccifort-2015.2.164-GCC-4.9.2' cmd += '\nmodule load SAMblaster/0.1.22-iccifort-2015.2.164-GCC-4.9.2'