Is phenotype computed too much?

[frederic-michaud]

Outputing the phenotype stat for a large number of patch make quantinemo incredibly slow. I suspect that this is coming from computing it too much.

This line probably loop over all patch (since we want to compute q.meanP001, q.meanP002, etc.

quantinemo/src/stathandler.cpp

Line 707 in 2fc9a2e

for (REC_IT rec = _recorders.begin(); rec != _recorders.end(); rec++) {

It is then calling this line:

quantinemo/include/ttquanti.h

Line 415 in 2fc9a2e

setMeanAndVar_Vp();

This line ask to recompute it for every patch. So we have two intrictate loops computing the phenotype. See this line:

quantinemo/src/ttquanti.cpp

Line 3233 in 2fc9a2e

for(unsigned int i=0; curPop!=endPop; ++curPop, ++i){ // for each patch