combining krakenuniq reports

[Sabrin2020]

Is this scripts could be working with krakenuniq reports? If yes how to fix it please

combine_kreports.py -r *-krakenuniq-report.tsv -o COMBINED.KREPORT --display-headers

STEP 1: READING REPORTS
1/301 samples processedTraceback (most recent call last):
File "/user/asga9989/.conda/envs/krakentools/bin/combine_kreports.py", line 311, in
main()
File "/user/asga9989/.conda/envs/krakentools/bin/combine_kreports.py", line 226, in main
while level_num != (prev_node.level_num + 1):
^^^^^^^^^^^^^^^^^^^
AttributeError: 'int' object has no attribute 'level_num'

head _PL17_99indbel-krakenuniq-report.tsv

# KrakenUniq v1.0.3 DATE:2023-08-06T00:57:24Z DB:/gss/work/asga9989/krakenuniq/microbial-nt DB_SIZE:706079654188 WD:/gss/work/asga9989/all_samples_run
# CL:/cm/shared/uniol/software/8.3/KrakenUniq/1.0.3-intel-2019b/bin/krakenuniq --db /gss/work/asga9989/krakenuniq/microbial-nt --threads 20 --fastq-input --gzip-compressed --paired --output 07_TAXONOMY_references_removed/_PL17_99indbel.krakenuniq --report-file 07_TAXONOMY_references_removed/_PL17_99indbel-krakenuniq-report.tsv 01_QC/_PL17_99indbel-FILTERED_R1.fastq.gz 01_QC/_PL17_99indbel-FILTERED_R2.fastq.gz
%       reads   taxReads        kmers   dup     cov     taxID   rank    taxName
43.16   783047  783047  132171775       3.13    NA      0       no rank unclassified
56.84   1031262 3084    504258  49.4    8.57e-06        1       no rank root
56.47   1024531 4231    491054  20.4    8.674e-06       131567  no rank   cellular organisms
54.03   980284  199152  475276  13.8    1.16e-05        2       superkingdom        Bacteria
31.88   578351  139858  424790  6.27    2.301e-05       1224    phylum        Pseudomonadota
12.22   221695  129781  337596  4.34    3.528e-05       1236    class           Gammaproteobacteria
3.011   54630   7       1869    62.1    7.733e-07       91347   order             Enterobacterales

[jenniferlu717]

The script should work for kuniq reports but I'll check.

[songkue]

Hi there, I am also having the same error code when trying to combine my krakenuniq reportfiles. Is there a resolution for this?
Thank you for your help!