HailPractice_OpticNerve.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "f8f0291b",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2021-10-01 14:21:23 WARN  Utils:69 - Your hostname, DESKTOP-QBM5TNS resolves to a loopback address: 127.0.1.1; using 192.168.0.7 instead (on interface wifi0)\n",
      "2021-10-01 14:21:23 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address\n",
      "2021-10-01 14:21:23 WARN  NativeCodeLoader:60 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Setting default log level to \"WARN\".\n",
      "To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2021-10-01 14:21:24 WARN  Hail:43 - This Hail JAR was compiled for Spark 3.1.1, running with Spark 3.1.2.\n",
      "  Compatibility is not guaranteed.\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Running on Apache Spark version 3.1.2\n",
      "SparkUI available at http://192.168.0.7:4040\n",
      "Welcome to\n",
      "     __  __     <>__\n",
      "    / /_/ /__  __/ /\n",
      "   / __  / _ `/ / /\n",
      "  /_/ /_/\\_,_/_/_/   version 0.2.75-52791e9868e4\n",
      "LOGGING: writing to /mnt/c/Users/Owner/Documents/BioinformaticsStudy/HailPractice_OpticNerve/hail-20211001-1421-0.2.75-52791e9868e4.log\n"
     ]
    }
   ],
   "source": [
    "import hail as hl\n",
    "hl.init()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "cbe44909",
   "metadata": {},
   "outputs": [
    {
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       "    <div class=\"bk-root\">\n",
       "        <a href=\"https://bokeh.org\" target=\"_blank\" class=\"bk-logo bk-logo-small bk-logo-notebook\"></a>\n",
       "        <span id=\"1001\">Loading BokehJS ...</span>\n",
       "    </div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
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       "  }\n",
       "\n",
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       "\n",
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       "   */\n",
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       "  }\n",
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       "    if (id != null && id in Bokeh.index) {\n",
       "      Bokeh.index[id].model.document.clear();\n",
       "      delete Bokeh.index[id];\n",
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       "      // Clean up Bokeh references\n",
       "      var cmd = \"from bokeh.io.state import curstate; print(curstate().uuid_to_server['\" + server_id + \"'].get_sessions()[0].document.roots[0]._id)\";\n",
       "      cell.notebook.kernel.execute(cmd, {\n",
       "        iopub: {\n",
       "          output: function(msg) {\n",
       "            var id = msg.content.text.trim();\n",
       "            if (id in Bokeh.index) {\n",
       "              Bokeh.index[id].model.document.clear();\n",
       "              delete Bokeh.index[id];\n",
       "            }\n",
       "          }\n",
       "        }\n",
       "      });\n",
       "      // Destroy server and session\n",
       "      var cmd = \"import bokeh.io.notebook as ion; ion.destroy_server('\" + server_id + \"')\";\n",
       "      cell.notebook.kernel.execute(cmd);\n",
       "    }\n",
       "  }\n",
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       "   * Handle when a new output is added\n",
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       "  function handleAddOutput(event, handle) {\n",
       "    var output_area = handle.output_area;\n",
       "    var output = handle.output;\n",
       "\n",
       "    // limit handleAddOutput to display_data with EXEC_MIME_TYPE content only\n",
       "    if ((output.output_type != \"display_data\") || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "      return\n",
       "    }\n",
       "\n",
       "    var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
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       "    if (output.metadata[EXEC_MIME_TYPE][\"id\"] !== undefined) {\n",
       "      toinsert[toinsert.length - 1].firstChild.textContent = output.data[JS_MIME_TYPE];\n",
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       "    if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "      var bk_div = document.createElement(\"div\");\n",
       "      bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "      var script_attrs = bk_div.children[0].attributes;\n",
       "      for (var i = 0; i < script_attrs.length; i++) {\n",
       "        toinsert[toinsert.length - 1].firstChild.setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
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       "      // store reference to server id on output_area\n",
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       "  }\n",
       "\n",
       "  function register_renderer(events, OutputArea) {\n",
       "\n",
       "    function append_mime(data, metadata, element) {\n",
       "      // create a DOM node to render to\n",
       "      var toinsert = this.create_output_subarea(\n",
       "        metadata,\n",
       "        CLASS_NAME,\n",
       "        EXEC_MIME_TYPE\n",
       "      );\n",
       "      this.keyboard_manager.register_events(toinsert);\n",
       "      // Render to node\n",
       "      var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
       "      render(props, toinsert[toinsert.length - 1]);\n",
       "      element.append(toinsert);\n",
       "      return toinsert\n",
       "    }\n",
       "\n",
       "    /* Handle when an output is cleared or removed */\n",
       "    events.on('clear_output.CodeCell', handleClearOutput);\n",
       "    events.on('delete.Cell', handleClearOutput);\n",
       "\n",
       "    /* Handle when a new output is added */\n",
       "    events.on('output_added.OutputArea', handleAddOutput);\n",
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       "     */\n",
       "    OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
       "      /* Is output safe? */\n",
       "      safe: true,\n",
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       "\n",
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       "\n",
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       "  }\n",
       "\n",
       "  var NB_LOAD_WARNING = {'data': {'text/html':\n",
       "     \"<div style='background-color: #fdd'>\\n\"+\n",
       "     \"<p>\\n\"+\n",
       "     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n",
       "     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n",
       "     \"</p>\\n\"+\n",
       "     \"<ul>\\n\"+\n",
       "     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n",
       "     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n",
       "     \"</ul>\\n\"+\n",
       "     \"<code>\\n\"+\n",
       "     \"from bokeh.resources import INLINE\\n\"+\n",
       "     \"output_notebook(resources=INLINE)\\n\"+\n",
       "     \"</code>\\n\"+\n",
       "     \"</div>\"}};\n",
       "\n",
       "  function display_loaded() {\n",
       "    var el = document.getElementById(\"1001\");\n",
       "    if (el != null) {\n",
       "      el.textContent = \"BokehJS is loading...\";\n",
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       "      setTimeout(display_loaded, 100)\n",
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       "  }\n",
       "\n",
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       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) {\n",
       "        if (callback != null)\n",
       "          callback();\n",
       "      });\n",
       "    } finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.debug(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(css_urls, js_urls, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = css_urls.length + js_urls.length;\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
       "        run_callbacks()\n",
       "      }\n",
       "    }\n",
       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
       "    }\n",
       "\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }\n",
       "\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "  };var element = document.getElementById(\"1001\");\n",
       "  if (element == null) {\n",
       "    console.error(\"Bokeh: ERROR: autoload.js configured with elementid '1001' but no matching script tag was found. \")\n",
       "    return false;\n",
       "  }\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  \n",
       "  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-1.4.0.min.js\"];\n",
       "  var css_urls = [];\n",
       "  \n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    function(Bokeh) {\n",
       "    \n",
       "    \n",
       "    }\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    \n",
       "    if (root.Bokeh !== undefined || force === true) {\n",
       "      \n",
       "    for (var i = 0; i < inline_js.length; i++) {\n",
       "      inline_js[i].call(root, root.Bokeh);\n",
       "    }\n",
       "    if (force === true) {\n",
       "        display_loaded();\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    } else if (force !== true) {\n",
       "      var cell = $(document.getElementById(\"1001\")).parents('.cell').data().cell;\n",
       "      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n",
       "    }\n",
       "\n",
       "  }\n",
       "\n",
       "  if (root._bokeh_is_loading === 0) {\n",
       "    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(css_urls, js_urls, function() {\n",
       "      console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
       "    });\n",
       "  }\n",
       "}(window));"
      ],
      "application/vnd.bokehjs_load.v0+json": "\n(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n\n  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n    root._bokeh_onload_callbacks = [];\n    root._bokeh_is_loading = undefined;\n  }\n\n  \n\n  \n  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  var NB_LOAD_WARNING = {'data': {'text/html':\n     \"<div style='background-color: #fdd'>\\n\"+\n     \"<p>\\n\"+\n     \"BokehJS does not appear to have successfully loaded. If loading BokehJS from CDN, this \\n\"+\n     \"may be due to a slow or bad network connection. Possible fixes:\\n\"+\n     \"</p>\\n\"+\n     \"<ul>\\n\"+\n     \"<li>re-rerun `output_notebook()` to attempt to load from CDN again, or</li>\\n\"+\n     \"<li>use INLINE resources instead, as so:</li>\\n\"+\n     \"</ul>\\n\"+\n     \"<code>\\n\"+\n     \"from bokeh.resources import INLINE\\n\"+\n     \"output_notebook(resources=INLINE)\\n\"+\n     \"</code>\\n\"+\n     \"</div>\"}};\n\n  function display_loaded() {\n    var el = document.getElementById(\"1001\");\n    if (el != null) {\n      el.textContent = \"BokehJS is loading...\";\n    }\n    if (root.Bokeh !== undefined) {\n      if (el != null) {\n        el.textContent = \"BokehJS \" + root.Bokeh.version + \" successfully loaded.\";\n      }\n    } else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(display_loaded, 100)\n    }\n  }\n\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) {\n        if (callback != null)\n          callback();\n      });\n    } finally {\n      delete root._bokeh_onload_callbacks\n    }\n    console.debug(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(css_urls, js_urls, callback) {\n    if (css_urls == null) css_urls = [];\n    if (js_urls == null) js_urls = [];\n\n    root._bokeh_onload_callbacks.push(callback);\n    if (root._bokeh_is_loading > 0) {\n      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls == null || js_urls.length === 0) {\n      run_callbacks();\n      return null;\n    }\n    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    root._bokeh_is_loading = css_urls.length + js_urls.length;\n\n    function on_load() {\n      root._bokeh_is_loading--;\n      if (root._bokeh_is_loading === 0) {\n        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n        run_callbacks()\n      }\n    }\n\n    function on_error() {\n      console.error(\"failed to load \" + url);\n    }\n\n    for (var i = 0; i < css_urls.length; i++) {\n      var url = css_urls[i];\n      const element = document.createElement(\"link\");\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.rel = \"stylesheet\";\n      element.type = \"text/css\";\n      element.href = url;\n      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n      document.body.appendChild(element);\n    }\n\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n  };var element = document.getElementById(\"1001\");\n  if (element == null) {\n    console.error(\"Bokeh: ERROR: autoload.js configured with elementid '1001' but no matching script tag was found. \")\n    return false;\n  }\n\n  function inject_raw_css(css) {\n    const element = document.createElement(\"style\");\n    element.appendChild(document.createTextNode(css));\n    document.body.appendChild(element);\n  }\n\n  \n  var js_urls = [\"https://cdn.pydata.org/bokeh/release/bokeh-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-widgets-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-tables-1.4.0.min.js\", \"https://cdn.pydata.org/bokeh/release/bokeh-gl-1.4.0.min.js\"];\n  var css_urls = [];\n  \n\n  var inline_js = [\n    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\n    function(Bokeh) {\n    \n    \n    }\n  ];\n\n  function run_inline_js() {\n    \n    if (root.Bokeh !== undefined || force === true) {\n      \n    for (var i = 0; i < inline_js.length; i++) {\n      inline_js[i].call(root, root.Bokeh);\n    }\n    if (force === true) {\n        display_loaded();\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    } else if (force !== true) {\n      var cell = $(document.getElementById(\"1001\")).parents('.cell').data().cell;\n      cell.output_area.append_execute_result(NB_LOAD_WARNING)\n    }\n\n  }\n\n  if (root._bokeh_is_loading === 0) {\n    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n    run_inline_js();\n  } else {\n    load_libs(css_urls, js_urls, function() {\n      console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n      run_inline_js();\n    });\n  }\n}(window));"
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from hail.plot import show\n",
    "from pprint import pprint\n",
    "hl.plot.output_notebook()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "c02d3bea",
   "metadata": {},
   "outputs": [],
   "source": [
    "mt = hl.methods.read_matrix_table('CODA_vep_20210923.mt')"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "a9e8ae67",
   "metadata": {},
   "source": [
    "# Analyzing Data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "2123bdc0",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "----------------------------------------\n",
      "Global fields:\n",
      "    None\n",
      "----------------------------------------\n",
      "Column fields:\n",
      "    's': str\n",
      "----------------------------------------\n",
      "Row fields:\n",
      "    'locus': locus<GRCh38>\n",
      "    'alleles': array<str>\n",
      "    'rsid': str\n",
      "    'qual': float64\n",
      "    'filters': set<str>\n",
      "    'info': struct {\n",
      "        AC: array<int32>, \n",
      "        AF: array<float64>, \n",
      "        AN: int32, \n",
      "        AS_InbreedingCoeff: array<float64>, \n",
      "        AS_QD: array<float64>, \n",
      "        AS_RAW_BaseQRankSum: str, \n",
      "        AS_RAW_MQ: str, \n",
      "        AS_RAW_MQRankSum: str, \n",
      "        AS_RAW_ReadPosRankSum: str, \n",
      "        AS_SB_TABLE: str, \n",
      "        BaseQRankSum: float64, \n",
      "        DP: int32, \n",
      "        END: int32, \n",
      "        ExcessHet: float64, \n",
      "        FS: float64, \n",
      "        InbreedingCoeff: float64, \n",
      "        MLEAC: array<int32>, \n",
      "        MLEAF: array<float64>, \n",
      "        MQ: float64, \n",
      "        MQRankSum: float64, \n",
      "        NEGATIVE_TRAIN_SITE: bool, \n",
      "        POSITIVE_TRAIN_SITE: bool, \n",
      "        QD: float64, \n",
      "        RAW_MQandDP: array<int32>, \n",
      "        ReadPosRankSum: float64, \n",
      "        SOR: float64, \n",
      "        VQSLOD: float64, \n",
      "        culprit: str\n",
      "    }\n",
      "    'vep': struct {\n",
      "        assembly_name: str, \n",
      "        allele_string: str, \n",
      "        ancestral: str, \n",
      "        colocated_variants: array<struct {\n",
      "            aa_allele: str, \n",
      "            aa_maf: float64, \n",
      "            afr_allele: str, \n",
      "            afr_maf: float64, \n",
      "            allele_string: str, \n",
      "            amr_allele: str, \n",
      "            amr_maf: float64, \n",
      "            clin_sig: array<str>, \n",
      "            clin_sig_allele: str, \n",
      "            end: int32, \n",
      "            eas_allele: str, \n",
      "            eas_maf: float64, \n",
      "            ea_allele: str, \n",
      "            ea_maf: float64, \n",
      "            eur_allele: str, \n",
      "            eur_maf: float64, \n",
      "            exac_adj_allele: str, \n",
      "            exac_adj_maf: float64, \n",
      "            exac_allele: str, \n",
      "            exac_afr_allele: str, \n",
      "            exac_afr_maf: float64, \n",
      "            exac_amr_allele: str, \n",
      "            exac_amr_maf: float64, \n",
      "            exac_eas_allele: str, \n",
      "            exac_eas_maf: float64, \n",
      "            exac_fin_allele: str, \n",
      "            exac_fin_maf: float64, \n",
      "            exac_maf: float64, \n",
      "            exac_nfe_allele: str, \n",
      "            exac_nfe_maf: float64, \n",
      "            exac_oth_allele: str, \n",
      "            exac_oth_maf: float64, \n",
      "            exac_sas_allele: str, \n",
      "            exac_sas_maf: float64, \n",
      "            id: str, \n",
      "            frequencies: struct {\n",
      "                G: struct {\n",
      "                    eur: float64, \n",
      "                    eas: float64, \n",
      "                    amr: float64, \n",
      "                    afr: float64, \n",
      "                    sas: float64\n",
      "                }\n",
      "            }, \n",
      "            minor_allele: str, \n",
      "            minor_allele_freq: float64, \n",
      "            phenotype_or_disease: int32, \n",
      "            pubmed: array<int32>, \n",
      "            sas_allele: str, \n",
      "            sas_maf: float64, \n",
      "            seq_region_name: str, \n",
      "            somatic: int32, \n",
      "            start: int32, \n",
      "            strand: int32\n",
      "        }>, \n",
      "        context: str, \n",
      "        end: int32, \n",
      "        id: str, \n",
      "        input: str, \n",
      "        intergenic_consequences: array<struct {\n",
      "            allele_num: int32, \n",
      "            cadd_raw: float64, \n",
      "            cadd_phred: float64, \n",
      "            consequence_terms: array<str>, \n",
      "            impact: str, \n",
      "            minimised: int32, \n",
      "            variant_allele: str\n",
      "        }>, \n",
      "        most_severe_consequence: str, \n",
      "        motif_feature_consequences: array<struct {\n",
      "            allele_num: int32, \n",
      "            cadd_phred: float64, \n",
      "            cadd_raw: float64, \n",
      "            consequence_terms: array<str>, \n",
      "            high_inf_pos: str, \n",
      "            impact: str, \n",
      "            minimised: int32, \n",
      "            motif_feature_id: str, \n",
      "            motif_name: str, \n",
      "            motif_pos: int32, \n",
      "            motif_score_change: float64, \n",
      "            strand: int32, \n",
      "            variant_allele: str\n",
      "        }>, \n",
      "        regulatory_feature_consequences: array<struct {\n",
      "            allele_num: int32, \n",
      "            biotype: str, \n",
      "            cadd_raw: float64, \n",
      "            cadd_phred: float64, \n",
      "            consequence_terms: array<str>, \n",
      "            impact: str, \n",
      "            minimised: int32, \n",
      "            regulatory_feature_id: str, \n",
      "            variant_allele: str\n",
      "        }>, \n",
      "        seq_region_name: str, \n",
      "        nearest: array<str>, \n",
      "        start: int32, \n",
      "        strand: int32, \n",
      "        transcript_consequences: array<struct {\n",
      "            allele_num: int32, \n",
      "            amino_acids: str, \n",
      "            appris: str, \n",
      "            biotype: str, \n",
      "            cadd_phred: float64, \n",
      "            cadd_raw: float64, \n",
      "            canonical: int32, \n",
      "            ccds: str, \n",
      "            cdna_start: int32, \n",
      "            cdna_end: int32, \n",
      "            cds_end: int32, \n",
      "            cds_start: int32, \n",
      "            codons: str, \n",
      "            consequence_terms: array<str>, \n",
      "            distance: int32, \n",
      "            domains: array<struct {\n",
      "                db: str, \n",
      "                name: str\n",
      "            }>, \n",
      "            exon: str, \n",
      "            cds_end_NF: array<str>, \n",
      "            gene_id: str, \n",
      "            gene_pheno: int32, \n",
      "            gene_symbol: str, \n",
      "            gene_symbol_source: str, \n",
      "            hgnc_id: str, \n",
      "            hgvsg: str, \n",
      "            hgvsc: str, \n",
      "            hgvsp: str, \n",
      "            hgvs_offset: int32, \n",
      "            impact: str, \n",
      "            intron: str, \n",
      "            lof: str, \n",
      "            lof_flags: str, \n",
      "            lof_filter: str, \n",
      "            lof_info: str, \n",
      "            mane: str, \n",
      "            minimised: int32, \n",
      "            polyphen_prediction: str, \n",
      "            polyphen_score: float64, \n",
      "            protein_end: int32, \n",
      "            protein_start: int32, \n",
      "            protein_id: str, \n",
      "            sift_prediction: str, \n",
      "            sift_score: float64, \n",
      "            strand: int32, \n",
      "            swissprot: str, \n",
      "            transcript_id: str, \n",
      "            trembl: str, \n",
      "            tsl: int32, \n",
      "            uniparc: str, \n",
      "            variant_allele: str\n",
      "        }>, \n",
      "        variant_class: str\n",
      "    }\n",
      "----------------------------------------\n",
      "Entry fields:\n",
      "    'AD': array<int32>\n",
      "    'DP': int32\n",
      "    'GQ': int32\n",
      "    'GT': call\n",
      "    'MIN_DP': int32\n",
      "    'PGT': call\n",
      "    'PID': str\n",
      "    'PL': array<int32>\n",
      "    'PS': int32\n",
      "    'RGQ': int32\n",
      "    'SB': array<int32>\n",
      "----------------------------------------\n",
      "Column key: ['s']\n",
      "Row key: ['locus', 'alleles']\n",
      "----------------------------------------\n"
     ]
    }
   ],
   "source": [
    "mt.describe()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "b0d0a5c2",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "\r",
      "[Stage 0:>                                                          (0 + 2) / 2]\r"
     ]
    },
    {
     "data": {
      "text/html": [
       "<table><thead><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"28\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; 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padding-bottom: 5px\">info</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"18\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">vep</div></td></tr><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">locus</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">alleles</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">rsid</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">qual</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">filters</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AC</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AF</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AN</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_InbreedingCoeff</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_QD</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_RAW_BaseQRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_RAW_MQ</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_RAW_MQRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_RAW_ReadPosRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">AS_SB_TABLE</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">BaseQRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">DP</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">END</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">ExcessHet</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">FS</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">InbreedingCoeff</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">MLEAC</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">MLEAF</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">MQ</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">MQRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">NEGATIVE_TRAIN_SITE</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">POSITIVE_TRAIN_SITE</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">QD</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">RAW_MQandDP</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">ReadPosRankSum</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">SOR</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">VQSLOD</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">culprit</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">assembly_name</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">allele_string</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">ancestral</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">colocated_variants</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">context</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">end</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">id</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">input</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">intergenic_consequences</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">most_severe_consequence</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">motif_feature_consequences</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">regulatory_feature_consequences</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">seq_region_name</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">nearest</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">start</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">strand</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">transcript_consequences</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">variant_class</div></td></tr><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">locus&lt;GRCh38&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;str&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">set&lt;str&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;int32&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;float64&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;float64&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;float64&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;int32&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;float64&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">bool</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">bool</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;int32&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">float64</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;struct{aa_allele: str, aa_maf: float64, afr_allele: str, afr_maf: float64, allele_string: str, amr_allele: str, amr_maf: float64, clin_sig: array&lt;str&gt;, clin_sig_allele: str, end: int32, eas_allele: str, eas_maf: float64, ea_allele: str, ea_maf: float64, eur_allele: str, eur_maf: float64, exac_adj_allele: str, exac_adj_maf: float64, exac_allele: str, exac_afr_allele: str, exac_afr_maf: float64, exac_amr_allele: str, exac_amr_maf: float64, exac_eas_allele: str, exac_eas_maf: float64, exac_fin_allele: str, exac_fin_maf: float64, exac_maf: float64, exac_nfe_allele: str, exac_nfe_maf: float64, exac_oth_allele: str, exac_oth_maf: float64, exac_sas_allele: str, exac_sas_maf: float64, id: str, frequencies: struct{G: struct{eur: float64, eas: float64, amr: float64, afr: float64, sas: float64}}, minor_allele: str, minor_allele_freq: float64, phenotype_or_disease: int32, pubmed: array&lt;int32&gt;, sas_allele: str, sas_maf: float64, seq_region_name: str, somatic: int32, start: int32, strand: int32}&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;struct{allele_num: int32, cadd_raw: float64, cadd_phred: float64, consequence_terms: array&lt;str&gt;, impact: str, minimised: int32, variant_allele: str}&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;struct{allele_num: int32, cadd_phred: float64, cadd_raw: float64, consequence_terms: array&lt;str&gt;, high_inf_pos: str, impact: str, minimised: int32, motif_feature_id: str, motif_name: str, motif_pos: int32, motif_score_change: float64, strand: int32, variant_allele: str}&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;struct{allele_num: int32, biotype: str, cadd_raw: float64, cadd_phred: float64, consequence_terms: array&lt;str&gt;, impact: str, minimised: int32, regulatory_feature_id: str, variant_allele: str}&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;str&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">array&lt;struct{allele_num: int32, amino_acids: str, appris: str, biotype: str, cadd_phred: float64, cadd_raw: float64, canonical: int32, ccds: str, cdna_start: int32, cdna_end: int32, cds_end: int32, cds_start: int32, codons: str, consequence_terms: array&lt;str&gt;, distance: int32, domains: array&lt;struct{db: str, name: str}&gt;, exon: str, cds_end_NF: array&lt;str&gt;, gene_id: str, gene_pheno: int32, gene_symbol: str, gene_symbol_source: str, hgnc_id: str, hgvsg: str, hgvsc: str, hgvsp: str, hgvs_offset: int32, impact: str, intron: str, lof: str, lof_flags: str, lof_filter: str, lof_info: str, mane: str, minimised: int32, polyphen_prediction: str, polyphen_score: float64, protein_end: int32, protein_start: int32, protein_id: str, sift_prediction: str, sift_score: float64, strand: int32, swissprot: str, transcript_id: str, trembl: str, tsl: int32, uniparc: str, variant_allele: str}&gt;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td></tr>\n",
       "</thead><tbody><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69270</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;A&quot;,&quot;G&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+05</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1673]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[9.63e-01]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1738</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9706</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.95e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2354]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.00e+00]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.72e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.57e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.36e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.57e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">8.82e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-3.39e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SOR&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;A/G&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69270,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58736820&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69270,1),(NA,NA,NA,NA,&quot;A/G/T&quot;,NA,NA,NA,NA,69270,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs201219564&quot;,((NA,NA,NA,NA,NA)),NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,69270,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69270</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69270\t.\tA\tG\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;synonymous_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69270</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;S&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,303,303,243,243,&quot;tcA/tcG&quot;,[&quot;synonymous_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;),(&quot;Prints&quot;,&quot;PR00237&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.243A&gt;G&quot;,&quot;ENSP00000493376.2:p.Ser81=&quot;,NA,&quot;LOW&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,81,81,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;G&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69282</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;GTC&quot;,&quot;G&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.81e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheINDEL0.00to90.00+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.19e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1926</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">10213</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.85e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.19e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.50e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.87e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.25e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">8.18e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-6.18e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;TC/-&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69284</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69282\t.\tGTC\tG\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;frameshift_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69283</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;S/X&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,316,317,257,256,&quot;TCt/t&quot;,[&quot;frameshift_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;),(&quot;Prints&quot;,&quot;PR00237&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.259_260del&quot;,&quot;ENSP00000493376.2:p.Leu87ValfsTer11&quot;,3,&quot;HIGH&quot;,NA,&quot;LC&quot;,NA,&quot;END_TRUNC&quot;,&quot;GERP_DIST:0,BP_DIST:725,PERCENTILE:0.265035677879715,DIST_FROM_LAST_EXON:-246,50_BP_RULE:FAIL,PHYLOCSF_TOO_SHORT&quot;,NA,NA,NA,NA,86,86,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;-&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;deletion&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69511</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;A&quot;,&quot;G&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.12e+06</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2006]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[9.97e-01]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2012</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.92e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">109639</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.21e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2391]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.00e+00]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.60e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.77e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.06e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-3.74e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9.73e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-4.79e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;A/G&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69511,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58736924&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69511,1),(NA,NA,NA,NA,&quot;A/C/G/T&quot;,NA,NA,NA,NA,69511,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs2691305&quot;,((NA,NA,NA,NA,NA)),NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,69511,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69511</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69511\t.\tA\tG\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;missense_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69511</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;T/A&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,544,544,484,484,&quot;Aca/Gca&quot;,[&quot;missense_variant&quot;],NA,[(&quot;Transmembrane_helices&quot;,&quot;TMhelix&quot;),(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.484A&gt;G&quot;,&quot;ENSP00000493376.2:p.Thr162Ala&quot;,NA,&quot;MODERATE&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;benign&quot;,0.00e+00,162,162,&quot;ENSP00000493376&quot;,&quot;tolerated&quot;,8.50e-01,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;G&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69534</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;T&quot;,&quot;C&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.31e+04</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[10]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[4.69e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2132</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9.60e-02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">42963</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.00e-04</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.22e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.39e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[12]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.63e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.20e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.08e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.39e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9.70e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">7.59e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-4.05e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;T/C&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;T/C&quot;,NA,NA,NA,NA,69534,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs190717287&quot;,(NA),&quot;C&quot;,1.00e-03,NA,NA,NA,NA,&quot;1&quot;,NA,69534,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69534</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69534\t.\tT\tC\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;synonymous_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69534</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;H&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,567,567,507,507,&quot;caT/caC&quot;,[&quot;synonymous_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.507T&gt;C&quot;,&quot;ENSP00000493376.2:p.His169=&quot;,NA,&quot;LOW&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,169,169,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;C&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69552</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;G&quot;,&quot;C&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.54e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[8]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[3.73e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2144</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.11e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">42573</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.78e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.60e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2.33e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.41e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.79e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.15e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.02e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.13e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;FS&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;G/C&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69552,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58736955&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69552,1),(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69552,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58737154&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69552,1),(NA,NA,NA,NA,&quot;G/A/C/T&quot;,NA,NA,NA,NA,69552,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs2531266&quot;,(NA),NA,NA,NA,[20307285],NA,NA,&quot;1&quot;,NA,69552,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69552</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69552\t.\tG\tC\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;synonymous_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69552</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;A&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,585,585,525,525,&quot;gcG/gcC&quot;,[&quot;synonymous_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.525G&gt;C&quot;,&quot;ENSP00000493376.2:p.Ala175=&quot;,NA,&quot;LOW&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,175,175,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;C&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69609</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;C&quot;,&quot;A&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.46e+03</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[4.67e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2142</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.14e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">41953</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.95e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.56e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[4.67e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.82e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.37e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.24e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.08e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.59e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-4.73e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;ReadPosRankSum&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;C/A&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69609</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69609\t.\tC\tA\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;missense_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69609</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;D/E&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,642,642,582,582,&quot;gaC/gaA&quot;,[&quot;missense_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;),(&quot;Prints&quot;,&quot;PR00245&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.582C&gt;A&quot;,&quot;ENSP00000493376.2:p.Asp194Glu&quot;,NA,&quot;MODERATE&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;benign&quot;,3.06e-01,194,194,&quot;ENSP00000493376&quot;,&quot;deleterious&quot;,1.00e-02,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;A&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69610</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;C&quot;,&quot;T&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.84e+04</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[16]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[7.47e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2142</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.60e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">41949</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.80e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.34e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[18]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[8.40e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.70e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-3.49e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.46e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-7.70e-02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9.45e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;C/T&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69610,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58736829&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69610,1),(NA,NA,NA,NA,&quot;C/T&quot;,NA,NA,NA,NA,69610,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs376022826&quot;,(NA),&quot;T&quot;,2.20e-03,NA,NA,NA,NA,&quot;1&quot;,NA,69610,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69610</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69610\t.\tC\tT\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;missense_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69610</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;L/F&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,643,643,583,583,&quot;Ctt/Ttt&quot;,[&quot;missense_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;),(&quot;Prints&quot;,&quot;PR00245&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.583C&gt;T&quot;,&quot;ENSP00000493376.2:p.Leu195Phe&quot;,NA,&quot;MODERATE&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;probably_damaging&quot;,9.86e-01,195,195,&quot;ENSP00000493376&quot;,&quot;tolerated&quot;,1.00e-01,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;T&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69761</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;A&quot;,&quot;T&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.79e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[4.97e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2014</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">12736</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.12e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.01e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[4.97e-04]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.08e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.35e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.28e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-7.05e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.89e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.78e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;A/T&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;A/T&quot;,NA,NA,NA,NA,69761,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs200505207&quot;,(NA),&quot;T&quot;,3.67e-02,NA,NA,NA,NA,&quot;1&quot;,NA,69761,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69761</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69761\t.\tA\tT\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;missense_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69761</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;D/V&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,794,794,734,734,&quot;gAt/gTt&quot;,[&quot;missense_variant&quot;],NA,[(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.734A&gt;T&quot;,&quot;ENSP00000493376.2:p.Asp245Val&quot;,NA,&quot;MODERATE&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;benign&quot;,3.60e-01,245,245,&quot;ENSP00000493376&quot;,&quot;deleterious&quot;,2.00e-02,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;T&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:69897</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;T&quot;,&quot;C&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">5.95e+04</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[736]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[6.96e-01]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1058</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2395</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.00e-04</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.05e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.43e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1737]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.00e+00]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.02e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.66e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.18e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.19e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.74e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.69e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;FS&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;T/C&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,69897,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58736747&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,69897,1),(NA,NA,NA,NA,&quot;T/C&quot;,NA,NA,NA,NA,69897,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs200676709&quot;,(NA),&quot;T&quot;,3.12e-01,NA,NA,NA,NA,&quot;1&quot;,NA,69897,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69897</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t69897\t.\tT\tC\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;synonymous_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">69897</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,&quot;S&quot;,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,930,930,870,870,&quot;tcT/tcC&quot;,[&quot;synonymous_variant&quot;],NA,[(&quot;Transmembrane_helices&quot;,&quot;TMhelix&quot;),(&quot;PROSITE_profiles&quot;,&quot;PS50262&quot;),(&quot;CDD&quot;,&quot;cd15226&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;PANTHER&quot;,&quot;PTHR48002&quot;),(&quot;Pfam&quot;,&quot;PF13853&quot;),(&quot;Gene3D&quot;,&quot;1&quot;),(&quot;Superfamily&quot;,&quot;SSF81321&quot;),(&quot;Prints&quot;,&quot;PR00237&quot;)],&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.870T&gt;C&quot;,&quot;ENSP00000493376.2:p.Ser290=&quot;,NA,&quot;LOW&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,290,290,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;C&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:70256</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;A&quot;,&quot;G&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.48e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.83e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">546</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-5.24e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">457</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.45e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[6]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.10e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.74e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.04e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.97e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.68e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.80e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;A/G&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;A/G&quot;,NA,NA,NA,NA,70256,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs1177524365&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,70256,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70256</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t70256\t.\tA\tG\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;3_prime_UTR_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70256</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,1289,1289,NA,NA,NA,[&quot;3_prime_UTR_variant&quot;],NA,NA,&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.*248A&gt;G&quot;,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;G&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:70300</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;C&quot;,&quot;T&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.08e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2.34e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">428</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">342</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.37e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[9]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2.10e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.45e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.52e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.38e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.05e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-1.01e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;C/T&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;COSMIC_MUTATION&quot;,NA,NA,NA,NA,70300,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;COSV58737093&quot;,NA,NA,NA,1,NA,NA,NA,&quot;1&quot;,1,70300,1),(NA,NA,NA,NA,&quot;C/T&quot;,NA,NA,NA,NA,70300,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs2691303&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,70300,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70300</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t70300\t.\tC\tT\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;3_prime_UTR_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70300</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,1333,1333,NA,NA,NA,[&quot;3_prime_UTR_variant&quot;],NA,NA,&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.*292C&gt;T&quot;,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;T&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:70594</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;G&quot;,&quot;A&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">8.85e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[7.87e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">254</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">167</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">8.70e-03</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.37e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[16]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[6.30e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.40e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.54e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.93e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9.06e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;G/A&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;G/A/C&quot;,NA,NA,NA,NA,70594,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs535264883&quot;,NA,&quot;C&quot;,1.20e-03,NA,NA,NA,NA,&quot;1&quot;,NA,70594,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70594</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t70594\t.\tG\tA\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;3_prime_UTR_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70594</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,1627,1627,NA,NA,NA,[&quot;3_prime_UTR_variant&quot;],NA,NA,&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.*586G&gt;A&quot;,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;A&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:70679</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;A&quot;,&quot;T&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">8.85e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[2]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[8.40e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">238</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">175</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">9.20e-03</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.42e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[16]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[6.70e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.60e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">True</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.87e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.93e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.71e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;A/T&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70679</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t70679\t.\tA\tT\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;3_prime_UTR_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70679</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,1712,1712,NA,NA,NA,[&quot;3_prime_UTR_variant&quot;],NA,NA,&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.*671A&gt;T&quot;,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;T&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:70728</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;C&quot;,&quot;T&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.11e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.68e-03]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">176</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9.67e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">123</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.01e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.37e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[21]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[1.19e-01]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.40e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.10e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.23e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9.05e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;C/T&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;C/T&quot;,NA,NA,NA,NA,70728,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs1259734071&quot;,NA,NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,70728,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70728</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t70728\t.\tC\tT\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;3_prime_UTR_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">70728</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,&quot;P1&quot;,&quot;protein_coding&quot;,NA,NA,1,NA,1761,1761,NA,NA,NA,[&quot;3_prime_UTR_variant&quot;],NA,NA,&quot;3/3&quot;,NA,&quot;ENSG00000186092&quot;,NA,&quot;OR4F5&quot;,&quot;HGNC&quot;,&quot;HGNC:14825&quot;,NA,&quot;ENST00000641515.2:c.*720C&gt;T&quot;,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;ENSP00000493376&quot;,NA,NA,1,NA,&quot;ENST00000641515&quot;,NA,NA,NA,&quot;T&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">chr1:138733</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;G&quot;,&quot;A&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">7.46e+02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">{&quot;VQSRTrancheSNP0.00to99.50+&quot;}</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[9]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.10e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">178</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-5.30e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2979</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">3.93e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0.00e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-5.89e-02</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[9]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[5.10e-02]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2.66e+01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">4.10e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">False</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1.83e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-2.36e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">6.65e-01</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9.02e+00</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;MQ&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;GRCh38&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;G/A&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,NA,&quot;G/A/C&quot;,NA,NA,NA,NA,138733,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,&quot;rs765187176&quot;,(NA),NA,NA,NA,NA,NA,NA,&quot;1&quot;,NA,138733,1)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">138733</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;.&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1\t138733\t.\tG\tA\t.\t.\tGT&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;downstream_gene_variant&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">NA</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;chr1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[&quot;ENST00000641515&quot;]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">138733</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">[(NA,NA,NA,&quot;lncRNA&quot;,NA,NA,1,NA,NA,NA,NA,NA,NA,[&quot;downstream_gene_variant&quot;],1057,NA,NA,NA,&quot;ENSG00000239906&quot;,NA,NA,NA,NA,NA,NA,NA,NA,&quot;MODIFIER&quot;,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,-1,NA,&quot;ENST00000493797&quot;,NA,2,NA,&quot;A&quot;)]</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;SNV&quot;</td></tr>\n",
       "</tbody></table><p style=\"background: #fdd; padding: 0.4em;\">showing top 15 rows</p>\n"
      ],
      "text/plain": [
       "+---------------+-------------+------+----------+\n",
       "| locus         | alleles     | rsid |     qual |\n",
       "+---------------+-------------+------+----------+\n",
       "| locus<GRCh38> | array<str>  | str  |  float64 |\n",
       "+---------------+-------------+------+----------+\n",
       "| chr1:69270    | [\"A\",\"G\"]   | NA   | 3.01e+05 |\n",
       "| chr1:69282    | [\"GTC\",\"G\"] | NA   | 2.81e+02 |\n",
       "| chr1:69511    | [\"A\",\"G\"]   | NA   | 3.12e+06 |\n",
       "| chr1:69534    | [\"T\",\"C\"]   | NA   | 1.31e+04 |\n",
       "| chr1:69552    | [\"G\",\"C\"]   | NA   | 2.54e+02 |\n",
       "| chr1:69609    | [\"C\",\"A\"]   | NA   | 1.46e+03 |\n",
       "| chr1:69610    | [\"C\",\"T\"]   | NA   | 1.84e+04 |\n",
       "| chr1:69761    | [\"A\",\"T\"]   | NA   | 4.79e+02 |\n",
       "| chr1:69897    | [\"T\",\"C\"]   | NA   | 5.95e+04 |\n",
       "| chr1:70256    | [\"A\",\"G\"]   | NA   | 3.48e+01 |\n",
       "| chr1:70300    | [\"C\",\"T\"]   | NA   | 6.08e+01 |\n",
       "| chr1:70594    | [\"G\",\"A\"]   | NA   | 8.85e+01 |\n",
       "| chr1:70679    | [\"A\",\"T\"]   | NA   | 8.85e+01 |\n",
       "| chr1:70728    | [\"C\",\"T\"]   | NA   | 1.11e+02 |\n",
       "| chr1:138733   | [\"G\",\"A\"]   | NA   | 7.46e+02 |\n",
       "+---------------+-------------+------+----------+\n",
       "\n",
       "+----------------------------------+--------------+----------------+---------+\n",
       "| filters                          | info.AC      | info.AF        | info.AN |\n",
       "+----------------------------------+--------------+----------------+---------+\n",
       "| set<str>                         | array<int32> | array<float64> |   int32 |\n",
       "+----------------------------------+--------------+----------------+---------+\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1673]       | [9.63e-01]     |    1738 |\n",
       "| {\"VQSRTrancheINDEL0.00to90.00+\"} | [1]          | [5.19e-04]     |    1926 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [2006]       | [9.97e-01]     |    2012 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [10]         | [4.69e-03]     |    2132 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [8]          | [3.73e-03]     |    2144 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1]          | [4.67e-04]     |    2142 |\n",
       "| {}                               | [16]         | [7.47e-03]     |    2142 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1]          | [4.97e-04]     |    2014 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [736]        | [6.96e-01]     |    1058 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1]          | [1.83e-03]     |     546 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1]          | [2.34e-03]     |     428 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [2]          | [7.87e-03]     |     254 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [2]          | [8.40e-03]     |     238 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [1]          | [5.68e-03]     |     176 |\n",
       "| {\"VQSRTrancheSNP0.00to99.50+\"}   | [9]          | [5.10e-02]     |     178 |\n",
       "+----------------------------------+--------------+----------------+---------+\n",
       "\n",
       "+-------------------------+----------------+--------------------------+\n",
       "| info.AS_InbreedingCoeff | info.AS_QD     | info.AS_RAW_BaseQRankSum |\n",
       "+-------------------------+----------------+--------------------------+\n",
       "| array<float64>          | array<float64> | str                      |\n",
       "+-------------------------+----------------+--------------------------+\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "| NA                      | NA             | NA                       |\n",
       "+-------------------------+----------------+--------------------------+\n",
       "\n",
       "+----------------+-----------------------+----------------------------+\n",
       "| info.AS_RAW_MQ | info.AS_RAW_MQRankSum | info.AS_RAW_ReadPosRankSum |\n",
       "+----------------+-----------------------+----------------------------+\n",
       "| str            | str                   | str                        |\n",
       "+----------------+-----------------------+----------------------------+\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "| NA             | NA                    | NA                         |\n",
       "+----------------+-----------------------+----------------------------+\n",
       "\n",
       "+------------------+-------------------+---------+----------+----------------+\n",
       "| info.AS_SB_TABLE | info.BaseQRankSum | info.DP | info.END | info.ExcessHet |\n",
       "+------------------+-------------------+---------+----------+----------------+\n",
       "| str              |           float64 |   int32 |    int32 |        float64 |\n",
       "+------------------+-------------------+---------+----------+----------------+\n",
       "| NA               |          0.00e+00 |    9706 |       NA |       0.00e+00 |\n",
       "| NA               |          0.00e+00 |   10213 |       NA |       3.01e+00 |\n",
       "| NA               |         -1.92e-01 |  109639 |       NA |       0.00e+00 |\n",
       "| NA               |          9.60e-02 |   42963 |       NA |       3.00e-04 |\n",
       "| NA               |          1.11e+00 |   42573 |       NA |       0.00e+00 |\n",
       "| NA               |         -2.14e+00 |   41953 |       NA |       3.01e+00 |\n",
       "| NA               |          3.60e-01 |   41949 |       NA |       0.00e+00 |\n",
       "| NA               |          0.00e+00 |   12736 |       NA |       3.01e+00 |\n",
       "| NA               |          0.00e+00 |    2395 |       NA |       1.00e-04 |\n",
       "| NA               |         -5.24e-01 |     457 |       NA |       3.01e+00 |\n",
       "| NA               |          0.00e+00 |     342 |       NA |       3.01e+00 |\n",
       "| NA               |                NA |     167 |       NA |       8.70e-03 |\n",
       "| NA               |                NA |     175 |       NA |       9.20e-03 |\n",
       "| NA               |         -9.67e-01 |     123 |       NA |       3.01e+00 |\n",
       "| NA               |         -5.30e-01 |    2979 |       NA |       3.93e+00 |\n",
       "+------------------+-------------------+---------+----------+----------------+\n",
       "\n",
       "+----------+----------------------+--------------+----------------+----------+\n",
       "|  info.FS | info.InbreedingCoeff | info.MLEAC   | info.MLEAF     |  info.MQ |\n",
       "+----------+----------------------+--------------+----------------+----------+\n",
       "|  float64 |              float64 | array<int32> | array<float64> |  float64 |\n",
       "+----------+----------------------+--------------+----------------+----------+\n",
       "| 0.00e+00 |             4.95e-01 | [2354]       | [1.00e+00]     | 2.72e+01 |\n",
       "| 0.00e+00 |             4.85e-01 | [1]          | [5.19e-04]     | 2.50e+01 |\n",
       "| 0.00e+00 |             6.21e-01 | [2391]       | [1.00e+00]     | 3.60e+01 |\n",
       "| 5.22e-01 |             5.39e-01 | [12]         | [5.63e-03]     | 4.20e+01 |\n",
       "| 2.78e+01 |             5.60e-01 | [5]          | [2.33e-03]     | 4.41e+01 |\n",
       "| 1.95e+00 |             5.56e-01 | [1]          | [4.67e-04]     | 4.82e+01 |\n",
       "| 2.80e+00 |             5.34e-01 | [18]         | [8.40e-03]     | 4.70e+01 |\n",
       "| 3.12e+01 |             5.01e-01 | [1]          | [4.97e-04]     | 3.08e+01 |\n",
       "| 1.05e+02 |             2.43e-01 | [1737]       | [1.00e+00]     | 3.02e+01 |\n",
       "| 0.00e+00 |             3.45e-01 | [6]          | [1.10e-02]     | 4.74e+01 |\n",
       "| 0.00e+00 |             3.37e-01 | [9]          | [2.10e-02]     | 2.45e+01 |\n",
       "| 0.00e+00 |             3.37e-01 | [16]         | [6.30e-02]     | 2.40e+01 |\n",
       "| 0.00e+00 |             3.42e-01 | [16]         | [6.70e-02]     | 4.60e+01 |\n",
       "| 0.00e+00 |             3.37e-01 | [21]         | [1.19e-01]     | 2.40e+01 |\n",
       "| 0.00e+00 |            -5.89e-02 | [9]          | [5.10e-02]     | 2.66e+01 |\n",
       "+----------+----------------------+--------------+----------------+----------+\n",
       "\n",
       "+----------------+--------------------------+--------------------------+\n",
       "| info.MQRankSum | info.NEGATIVE_TRAIN_SITE | info.POSITIVE_TRAIN_SITE |\n",
       "+----------------+--------------------------+--------------------------+\n",
       "|        float64 |                     bool |                     bool |\n",
       "+----------------+--------------------------+--------------------------+\n",
       "|       1.57e-01 |                    False |                    False |\n",
       "|       0.00e+00 |                    False |                    False |\n",
       "|      -1.77e+00 |                    False |                    False |\n",
       "|       3.08e-01 |                     True |                    False |\n",
       "|       0.00e+00 |                     True |                    False |\n",
       "|       1.37e+00 |                     True |                    False |\n",
       "|      -3.49e-01 |                     True |                    False |\n",
       "|       1.35e+00 |                    False |                    False |\n",
       "|       3.66e-01 |                    False |                    False |\n",
       "|      -1.04e+00 |                     True |                    False |\n",
       "|       0.00e+00 |                    False |                    False |\n",
       "|             NA |                    False |                    False |\n",
       "|             NA |                     True |                    False |\n",
       "|       0.00e+00 |                    False |                    False |\n",
       "|       4.10e-01 |                    False |                    False |\n",
       "+----------------+--------------------------+--------------------------+\n",
       "\n",
       "+----------+------------------+---------------------+----------+-------------+\n",
       "|  info.QD | info.RAW_MQandDP | info.ReadPosRankSum | info.SOR | info.VQSLOD |\n",
       "+----------+------------------+---------------------+----------+-------------+\n",
       "|  float64 | array<int32>     |             float64 |  float64 |     float64 |\n",
       "+----------+------------------+---------------------+----------+-------------+\n",
       "| 3.36e+01 | NA               |            1.57e-01 | 8.82e+00 |   -3.39e+01 |\n",
       "| 1.87e+01 | NA               |            1.25e+00 | 8.18e-01 |   -6.18e+00 |\n",
       "| 3.06e+01 | NA               |           -3.74e-01 | 9.73e-01 |   -4.79e+00 |\n",
       "| 1.39e+01 | NA               |            9.70e-01 | 7.59e-01 |   -4.05e+00 |\n",
       "| 3.79e+00 | NA               |            1.15e+00 | 5.02e+00 |   -2.13e+01 |\n",
       "| 1.24e+01 | NA               |           -2.08e+00 | 4.59e-01 |   -4.73e+00 |\n",
       "| 1.46e+01 | NA               |           -7.70e-02 | 9.45e-01 |   -1.01e+00 |\n",
       "| 2.28e+01 | NA               |           -7.05e-01 | 5.89e+00 |   -2.78e+01 |\n",
       "| 3.18e+01 | NA               |            3.19e-01 | 1.74e+00 |   -1.69e+02 |\n",
       "| 6.97e+00 | NA               |            0.00e+00 | 3.68e-01 |   -2.80e+00 |\n",
       "| 1.52e+01 | NA               |           -1.38e+00 | 1.05e-01 |   -1.01e+01 |\n",
       "| 2.54e+01 | NA               |                  NA | 6.93e-01 |   -9.06e+00 |\n",
       "| 2.87e+01 | NA               |                  NA | 6.93e-01 |   -2.71e+00 |\n",
       "| 3.10e+01 | NA               |            0.00e+00 | 2.23e-01 |   -9.05e+00 |\n",
       "| 1.83e+00 | NA               |           -2.36e-01 | 6.65e-01 |   -9.02e+00 |\n",
       "+----------+------------------+---------------------+----------+-------------+\n",
       "\n",
       "+------------------+-------------------+-------------------+---------------+\n",
       "| info.culprit     | vep.assembly_name | vep.allele_string | vep.ancestral |\n",
       "+------------------+-------------------+-------------------+---------------+\n",
       "| str              | str               | str               | str           |\n",
       "+------------------+-------------------+-------------------+---------------+\n",
       "| \"SOR\"            | \"GRCh38\"          | \"A/G\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"TC/-\"            | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"A/G\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"T/C\"             | NA            |\n",
       "| \"FS\"             | \"GRCh38\"          | \"G/C\"             | NA            |\n",
       "| \"ReadPosRankSum\" | \"GRCh38\"          | \"C/A\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"C/T\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"A/T\"             | NA            |\n",
       "| \"FS\"             | \"GRCh38\"          | \"T/C\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"A/G\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"C/T\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"G/A\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"A/T\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"C/T\"             | NA            |\n",
       "| \"MQ\"             | \"GRCh38\"          | \"G/A\"             | NA            |\n",
       "+------------------+-------------------+-------------------+---------------+\n",
       "\n",
       "+------------------------------------------------------------------------------+\n",
       "| vep.colocated_variants                                                       |\n",
       "+------------------------------------------------------------------------------+\n",
       "| array<struct{aa_allele: str, aa_maf: float64, afr_allele: str, afr_maf: f... |\n",
       "+------------------------------------------------------------------------------+\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,69270,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| NA                                                                           |\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,69511,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"T/C\",NA,NA,NA,NA,69534,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,69552,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| NA                                                                           |\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,69610,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"A/T\",NA,NA,NA,NA,69761,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,69897,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"A/G\",NA,NA,NA,NA,70256,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"COSMIC_MUTATION\",NA,NA,NA,NA,70300,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"G/A/C\",NA,NA,NA,NA,70594,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,... |\n",
       "| NA                                                                           |\n",
       "| [(NA,NA,NA,NA,\"C/T\",NA,NA,NA,NA,70728,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "| [(NA,NA,NA,NA,\"G/A/C\",NA,NA,NA,NA,138733,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA... |\n",
       "+------------------------------------------------------------------------------+\n",
       "\n",
       "+-------------+---------+--------+-----------------------------+\n",
       "| vep.context | vep.end | vep.id | vep.input                   |\n",
       "+-------------+---------+--------+-----------------------------+\n",
       "| str         |   int32 | str    | str                         |\n",
       "+-------------+---------+--------+-----------------------------+\n",
       "| NA          |   69270 | \".\"    | \"chr1\t69270\t.\tA\tG\t.\t.\tGT\"   |\n",
       "| NA          |   69284 | \".\"    | \"chr1\t69282\t.\tGTC\tG\t.\t.\tGT\" |\n",
       "| NA          |   69511 | \".\"    | \"chr1\t69511\t.\tA\tG\t.\t.\tGT\"   |\n",
       "| NA          |   69534 | \".\"    | \"chr1\t69534\t.\tT\tC\t.\t.\tGT\"   |\n",
       "| NA          |   69552 | \".\"    | \"chr1\t69552\t.\tG\tC\t.\t.\tGT\"   |\n",
       "| NA          |   69609 | \".\"    | \"chr1\t69609\t.\tC\tA\t.\t.\tGT\"   |\n",
       "| NA          |   69610 | \".\"    | \"chr1\t69610\t.\tC\tT\t.\t.\tGT\"   |\n",
       "| NA          |   69761 | \".\"    | \"chr1\t69761\t.\tA\tT\t.\t.\tGT\"   |\n",
       "| NA          |   69897 | \".\"    | \"chr1\t69897\t.\tT\tC\t.\t.\tGT\"   |\n",
       "| NA          |   70256 | \".\"    | \"chr1\t70256\t.\tA\tG\t.\t.\tGT\"   |\n",
       "| NA          |   70300 | \".\"    | \"chr1\t70300\t.\tC\tT\t.\t.\tGT\"   |\n",
       "| NA          |   70594 | \".\"    | \"chr1\t70594\t.\tG\tA\t.\t.\tGT\"   |\n",
       "| NA          |   70679 | \".\"    | \"chr1\t70679\t.\tA\tT\t.\t.\tGT\"   |\n",
       "| NA          |   70728 | \".\"    | \"chr1\t70728\t.\tC\tT\t.\t.\tGT\"   |\n",
       "| NA          |  138733 | \".\"    | \"chr1\t138733\t.\tG\tA\t.\t.\tGT\"  |\n",
       "+-------------+---------+--------+-----------------------------+\n",
       "\n",
       "+------------------------------------------------------------------------------+\n",
       "| vep.intergenic_consequences                                                  |\n",
       "+------------------------------------------------------------------------------+\n",
       "| array<struct{allele_num: int32, cadd_raw: float64, cadd_phred: float64, c... |\n",
       "+------------------------------------------------------------------------------+\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "+------------------------------------------------------------------------------+\n",
       "\n",
       "+-----------------------------+\n",
       "| vep.most_severe_consequence |\n",
       "+-----------------------------+\n",
       "| str                         |\n",
       "+-----------------------------+\n",
       "| \"synonymous_variant\"        |\n",
       "| \"frameshift_variant\"        |\n",
       "| \"missense_variant\"          |\n",
       "| \"synonymous_variant\"        |\n",
       "| \"synonymous_variant\"        |\n",
       "| \"missense_variant\"          |\n",
       "| \"missense_variant\"          |\n",
       "| \"missense_variant\"          |\n",
       "| \"synonymous_variant\"        |\n",
       "| \"3_prime_UTR_variant\"       |\n",
       "| \"3_prime_UTR_variant\"       |\n",
       "| \"3_prime_UTR_variant\"       |\n",
       "| \"3_prime_UTR_variant\"       |\n",
       "| \"3_prime_UTR_variant\"       |\n",
       "| \"downstream_gene_variant\"   |\n",
       "+-----------------------------+\n",
       "\n",
       "+------------------------------------------------------------------------------+\n",
       "| vep.motif_feature_consequences                                               |\n",
       "+------------------------------------------------------------------------------+\n",
       "| array<struct{allele_num: int32, cadd_phred: float64, cadd_raw: float64, c... |\n",
       "+------------------------------------------------------------------------------+\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "+------------------------------------------------------------------------------+\n",
       "\n",
       "+------------------------------------------------------------------------------+\n",
       "| vep.regulatory_feature_consequences                                          |\n",
       "+------------------------------------------------------------------------------+\n",
       "| array<struct{allele_num: int32, biotype: str, cadd_raw: float64, cadd_phr... |\n",
       "+------------------------------------------------------------------------------+\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "| NA                                                                           |\n",
       "+------------------------------------------------------------------------------+\n",
       "\n",
       "+---------------------+---------------------+-----------+------------+\n",
       "| vep.seq_region_name | vep.nearest         | vep.start | vep.strand |\n",
       "+---------------------+---------------------+-----------+------------+\n",
       "| str                 | array<str>          |     int32 |      int32 |\n",
       "+---------------------+---------------------+-----------+------------+\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69270 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69283 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69511 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69534 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69552 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69609 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69610 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69761 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     69897 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     70256 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     70300 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     70594 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     70679 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |     70728 |          1 |\n",
       "| \"chr1\"              | [\"ENST00000641515\"] |    138733 |          1 |\n",
       "+---------------------+---------------------+-----------+------------+\n",
       "\n",
       "+------------------------------------------------------------------------------+\n",
       "| vep.transcript_consequences                                                  |\n",
       "+------------------------------------------------------------------------------+\n",
       "| array<struct{allele_num: int32, amino_acids: str, appris: str, biotype: s... |\n",
       "+------------------------------------------------------------------------------+\n",
       "| [(NA,\"S\",\"P1\",\"protein_coding\",NA,NA,1,NA,303,303,243,243,\"tcA/tcG\",[\"syn... |\n",
       "| [(NA,\"S/X\",\"P1\",\"protein_coding\",NA,NA,1,NA,316,317,257,256,\"TCt/t\",[\"fra... |\n",
       "| [(NA,\"T/A\",\"P1\",\"protein_coding\",NA,NA,1,NA,544,544,484,484,\"Aca/Gca\",[\"m... |\n",
       "| [(NA,\"H\",\"P1\",\"protein_coding\",NA,NA,1,NA,567,567,507,507,\"caT/caC\",[\"syn... |\n",
       "| [(NA,\"A\",\"P1\",\"protein_coding\",NA,NA,1,NA,585,585,525,525,\"gcG/gcC\",[\"syn... |\n",
       "| [(NA,\"D/E\",\"P1\",\"protein_coding\",NA,NA,1,NA,642,642,582,582,\"gaC/gaA\",[\"m... |\n",
       "| [(NA,\"L/F\",\"P1\",\"protein_coding\",NA,NA,1,NA,643,643,583,583,\"Ctt/Ttt\",[\"m... |\n",
       "| [(NA,\"D/V\",\"P1\",\"protein_coding\",NA,NA,1,NA,794,794,734,734,\"gAt/gTt\",[\"m... |\n",
       "| [(NA,\"S\",\"P1\",\"protein_coding\",NA,NA,1,NA,930,930,870,870,\"tcT/tcC\",[\"syn... |\n",
       "| [(NA,NA,\"P1\",\"protein_coding\",NA,NA,1,NA,1289,1289,NA,NA,NA,[\"3_prime_UTR... |\n",
       "| [(NA,NA,\"P1\",\"protein_coding\",NA,NA,1,NA,1333,1333,NA,NA,NA,[\"3_prime_UTR... |\n",
       "| [(NA,NA,\"P1\",\"protein_coding\",NA,NA,1,NA,1627,1627,NA,NA,NA,[\"3_prime_UTR... |\n",
       "| [(NA,NA,\"P1\",\"protein_coding\",NA,NA,1,NA,1712,1712,NA,NA,NA,[\"3_prime_UTR... |\n",
       "| [(NA,NA,\"P1\",\"protein_coding\",NA,NA,1,NA,1761,1761,NA,NA,NA,[\"3_prime_UTR... |\n",
       "| [(NA,NA,NA,\"lncRNA\",NA,NA,1,NA,NA,NA,NA,NA,NA,[\"downstream_gene_variant\"]... |\n",
       "+------------------------------------------------------------------------------+\n",
       "\n",
       "+-------------------+\n",
       "| vep.variant_class |\n",
       "+-------------------+\n",
       "| str               |\n",
       "+-------------------+\n",
       "| \"SNV\"             |\n",
       "| \"deletion\"        |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "| \"SNV\"             |\n",
       "+-------------------+\n",
       "showing top 15 rows"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "mt.rows().show(15)"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "0ea0ae26",
   "metadata": {},
   "source": [
    "**Filters**\n",
    "* VQSR(Variant Quality Score Recalibration):\n",
    "    - calculates a new quality score called the VQSLOD (for variant quality score log-odds)\n",
    "    - uses machine learning algorithms to learn from each dataset what is the annotation profile of good variants vs. bad variants, and does so in a way that integrates information from multiple dimensions. (improvement from original system's binary approach of; is it above or below threshold?)\n",
    "    - compares variants with 'truth sites' that are provided (ex. HapMap3) to process probability that a variant call is a true genetic variant\n",
    "    - VQSRTrancheSNP0.00to99: variant was in the range of VQSLODs corresponding to the remaining 0.1% of the truth set, which are considered false positives\n",
    "\n",
    "**Info**\n",
    "* BaseQRankSum: REF versus ALT base quality scores. ideal score is close to 0.\n",
    "* QD:  variant confidence (from the QUAL field) divided by the unfiltered depth of non-hom-ref samples. It is intended to normalize the variant quality in order to avoid inflation caused when there is deep coverage. \n",
    "* MQ: mapping quality. when it is good, it is near 60.\n",
    "* MQRankSum: positive value means the mapping qualities of the reads supporting the alternate allele are higher than those supporting the reference allele (*this is a hard filter, so recommended to be lenient)\n",
    "* SB: strand bias\n",
    "* END: end position of the variant described in this record\n",
    "* ExcessHet: Phred-scaled p-value for exact test of excess heterozygosity. The higher the score, the higher the chance that the variant is a technical artifact or that there is consanguinuity among the samples.\n",
    "* FS: fisher strand. determines whether there is a difference in the number of reads that support the reference allele and alternate allele on each strand\n",
    "* InbreedingCoeff: Likelihood-based test for the consanguinuity among samples. \n",
    "* MLE: maximum likelihood estimation\n",
    "* ReadPosRankSum: whether there is evidence of bias in the position of alleles within the reads that support them. ideal score is close to 0\n",
    "* SOR: estimate strand bias. It was created because FS tends to penalize variants that occur at the ends of exons. It will take into account the ratios of reads that cover both alleles. (*high SOR value: high chance of failing VQSR filter')\n",
    "* culprit: the annotation that lowers the VQSLOD score the most\n",
    "\n",
    "**VEP(Variant Effect Predictor)**\n",
    "* end: end position of the variant described\n",
    "* nearest: shows gencode transcript of nearest gene\n",
    "* start: start position of the variant described"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "28f758bf",
   "metadata": {},
   "source": [
    "**Entry Fields**\n",
    "\n",
    "* AD: unfiltered allele depth\n",
    "\n",
    "* DP: filtered depth\n",
    "\n",
    "* GQ: genotype quality. Phred-scaled confidence that the genotype assignment (GT) is correct. −10log10 p (p: chance that genotype call is wrong)\n",
    "\n",
    "* GT: genotype. 0: ref, 1: alt, /: unphased, |: phased\n",
    "\n",
    "* PGT: Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another. (Which parent is it inherited from?)\n",
    "\n",
    "* PID: Physical phasing ID information, where each unique ID within a given sample\n",
    "\n",
    "* PL: \"Normalized\" Phred-scaled likelihood of possible genotype. Three numbers corresponding to the genotypes (0/0, 0/1, and 1/1). Higher the probability, lower the score.\n",
    "\n",
    "* PS:  phase set. a set of phased genotypes to which this genotype belongs\n",
    "\n",
    "* RGQ: Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)\n",
    "\n",
    "* SB: strand bias"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ba568978",
   "metadata": {},
   "source": [
    "## Annotating .fam data\n",
    "We are annotating the .fam data for each sample in order to check each sample's phenotype (is it case or control?) more easily."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "id": "fd2dd999",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2021-10-01 16:31:29 Hail: INFO: Reading table to impute column types\n",
      "2021-10-01 16:31:29 Hail: INFO: Finished type imputation\n",
      "  Loading field 'FID' as type str (imputed)\n",
      "  Loading field 'IID' as type str (imputed)\n",
      "  Loading field 'IID_P' as type str (imputed)\n",
      "  Loading field 'IID_M' as type str (imputed)\n",
      "  Loading field 'Sex' as type int32 (imputed)\n",
      "  Loading field 'Pheno_val' as type int32 (imputed)\n"
     ]
    }
   ],
   "source": [
    "faminfo = hl.import_table('CODA_0322.txt', impute=True).key_by('IID')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "id": "c762b746",
   "metadata": {},
   "outputs": [],
   "source": [
    "mt = mt.annotate_cols(fam_data = faminfo[mt.s])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "id": "f1a510a0",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2021-10-01 16:33:21 Hail: INFO: Coerced sorted dataset\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "<table><thead><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"5\"><div style=\"text-align: left;\"></div></td></tr><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;\"></div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"5\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">fam_data</div></td></tr><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">s</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">FID</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">IID_P</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">IID_M</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">Sex</div></td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \" colspan=\"1\"><div style=\"text-align: left;border-bottom: solid 2px #000; padding-bottom: 5px\">Pheno_val</div></td></tr><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">str</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; text-align: left;\">int32</td></tr>\n",
       "</thead><tbody><tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0_3&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f0_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101_3&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f101_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">1</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102_3&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102_1&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f102_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">0</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td></tr>\n",
       "<tr><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f10_2&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;f10&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">&quot;0&quot;</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">2</td><td style=\"white-space: nowrap; max-width: 500px; overflow: hidden; text-overflow: ellipsis; \">-9</td></tr>\n",
       "</tbody></table><p style=\"background: #fdd; padding: 0.4em;\">showing top 10 rows</p>\n"
      ],
      "text/plain": [
       "+----------+--------------+----------------+----------------+--------------+\n",
       "| s        | fam_data.FID | fam_data.IID_P | fam_data.IID_M | fam_data.Sex |\n",
       "+----------+--------------+----------------+----------------+--------------+\n",
       "| str      | str          | str            | str            |        int32 |\n",
       "+----------+--------------+----------------+----------------+--------------+\n",
       "| \"f0_1\"   | \"f0\"         | \"0\"            | \"0\"            |            1 |\n",
       "| \"f0_2\"   | \"f0\"         | \"0\"            | \"0\"            |            2 |\n",
       "| \"f0_3\"   | \"f0\"         | \"f0_1\"         | \"f0_2\"         |            0 |\n",
       "| \"f101_1\" | \"f101\"       | \"0\"            | \"0\"            |            1 |\n",
       "| \"f101_2\" | \"f101\"       | \"0\"            | \"0\"            |            2 |\n",
       "| \"f101_3\" | \"f101\"       | \"f101_1\"       | \"f101_2\"       |            0 |\n",
       "| \"f102_1\" | \"f102\"       | \"0\"            | \"0\"            |            1 |\n",
       "| \"f102_2\" | \"f102\"       | \"0\"            | \"0\"            |            2 |\n",
       "| \"f102_3\" | \"f102\"       | \"f102_1\"       | \"f102_2\"       |            0 |\n",
       "| \"f10_2\"  | \"f10\"        | \"0\"            | \"0\"            |            2 |\n",
       "+----------+--------------+----------------+----------------+--------------+\n",
       "\n",
       "+--------------------+\n",
       "| fam_data.Pheno_val |\n",
       "+--------------------+\n",
       "|              int32 |\n",
       "+--------------------+\n",
       "|                 -9 |\n",
       "|                 -9 |\n",
       "|                  2 |\n",
       "|                 -9 |\n",
       "|                 -9 |\n",
       "|                  2 |\n",
       "|                 -9 |\n",
       "|                 -9 |\n",
       "|                  2 |\n",
       "|                 -9 |\n",
       "+--------------------+\n",
       "showing top 10 rows"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "mt.cols().show()"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "961e93c0",
   "metadata": {},
   "source": [
    "* IID_P: within family ID of father. (0 when father is not in dataset)\n",
    "* IID_M: within family ID of mother. (0 when mother is not in dataset)\n",
    "* Sex: 1 = male/ 2 = female/ 0 = unknown\n",
    "* PHeno_val: 1 = control/ 2 = case/ -9 = missing data"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "96029f78",
   "metadata": {},
   "source": [
    "Let's Check how many patients(case) is in our data!"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "id": "5cb35129",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "frozendict({False: 82, True: 40})"
      ]
     },
     "execution_count": 38,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mt.aggregate_cols(hl.agg.counter(mt.fam_data.Pheno_val == 2))"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "76f3d128",
   "metadata": {},
   "source": [
    "There are 40 cases out of 122 in our data."
   ]
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3 (ipykernel)",
   "language": "python",
   "name": "python3"
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   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
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