From a6cbaa789b6e29a180e18e08ae1e35ed7bb46ef5 Mon Sep 17 00:00:00 2001
From: James Krieger <jamesmkrieger@gmail.com>
Date: Tue, 3 Dec 2024 17:07:06 +0100
Subject: [PATCH] bug fix for buildMSA MSA input

---
 prody/sequence/analysis.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/prody/sequence/analysis.py b/prody/sequence/analysis.py
index 765af1205..4db9af692 100644
--- a/prody/sequence/analysis.py
+++ b/prody/sequence/analysis.py
@@ -804,6 +804,8 @@ def buildMSA(sequences, title='Unknown', labels=None, **kwargs):
 
         if align and 'clustal' in method:
             filename = writeMSA(title + '.fasta', msa)
+    else:
+        filename = writeMSA(title + '.fasta', sequences)
 
     if align:
         # 2. find and run alignment method