diff --git a/README.rst b/README.rst index 9419bdf0f..c6d6f336b 100644 --- a/README.rst +++ b/README.rst @@ -1,5 +1,5 @@ -.. image:: https://img.shields.io/travis/prody/ProDy.svg - :target: http://travis-ci.org/#!/prody/ProDy +.. image:: https://img.shields.io/github/actions/workflow/status/prody/prody/main.yml + :target: https://github.com/prody/ProDy/actions/workflows/main.yml .. image:: https://img.shields.io/pypi/v/ProDy.svg :target: https://pypi.org/project/ProDy/ @@ -8,7 +8,7 @@ :target: https://github.com/prody/ProDy/commits/master .. image:: https://img.shields.io/pypi/dm/ProDy.svg - :target: http://prody.csb.pitt.edu/downloads/ + :target: http://www.bahargroup.org/prody/downloads/ SYNOPSIS -------- @@ -78,23 +78,23 @@ GETTING PRODY You can run ProDy on all major platforms. For download and installation instructions see: -* http://prody.csb.pitt.edu/downloads +* http://www.bahargroup.org/prody/downloads/ DOCUMENTATION ------------- -* Homepage: http://prody.csb.pitt.edu/ +* Homepage: http://www.bahargroup.org/prody/ -* Tutorials: http://prody.csb.pitt.edu/tutorials +* Tutorials: http://www.bahargroup.org/prody/tutorials -* Reference: http://prody.csb.pitt.edu/manual +* Reference: http://www.bahargroup.org/prody/manual -* Applications: http://prody.csb.pitt.edu/manual/apps +* Applications: http://www.bahargroup.org/prody/manual/apps -* NMWiz GUI: http://prody.csb.pitt.edu/nmwiz +* NMWiz GUI: http://www.bahargroup.org/prody/nmwiz -* Changes: http://prody.csb.pitt.edu/manual/release +* Changes: http://www.bahargroup.org/prody/manual/release See also https://github.com/prody/ProDy-website for latest versions. @@ -136,6 +136,7 @@ is used to perform calulations. The precompiled versions for Python 2.7, 3.8, 3.9, and 3.10 are availabe in prody/proteins/hpbmodule. The user can choose the correct version of hpb.so and copy to the prody/proteins or local directory. + C++ code of hpb.so was developed by Xin Cao and Fortran code by Xin Cao, Michelle H. Hummel, Bihua Yu, and Evangelos A. Coutsias (License in prody/proteins/hpbmodule folder). Details of the method can be found