diff --git a/prody/proteins/interactions.py b/prody/proteins/interactions.py index 471502cd9..2bed602d5 100644 --- a/prody/proteins/interactions.py +++ b/prody/proteins/interactions.py @@ -3460,6 +3460,17 @@ def buildInteractionMatrixEnergy(self, **kwargs): :arg energy_list_type: name of the list with energies default is 'IB_solv' :type energy_list_type: 'IB_nosolv', 'IB_solv', 'CS' + + 'IB_solv' and 'IB_nosolv' are derived from empirical potentials from + O Keskin, I Bahar and colleagues from [OK98]_. + + 'CS' is from MD simulations of amino acid pairs from Carlos Simmerling + and Gary Wu. + + .. [OK98] Keskin O, Bahar I, Badretdinov AY, Ptitsyn OB, Jernigan RL, + Empirical solvent-mediated potentials hold for both intra-molecular + and inter-molecular inter-residue interactions + *Protein Sci* **1998** 7(12):2578-2586. """ import numpy as np