setup.py

from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy

ext = Extension("pysapc.sparseAP_cy", ['pysapc/sparseAP_cy.pyx'],
        extra_compile_args=['-fopenmp'],
        extra_link_args=['-fopenmp'],
	include_dirs=[numpy.get_include()],
        )
setup(
    name="pysapc",
    version="1.0.0",
    description="Sparse Affinity Propagation Clustering",
    author="Huojun Cao",
    author_email="bioinfocao@gmail.com",
    url="https://github.com/bioinfocao/pysapc",
    license="BSD 3 clause",
    packages=["pysapc","pysapc.tests"],
    #packages = find_packages(), 
    package_data = {
            # If any package contains *.txt or *.rst files, include them:
            '': ['*.txt', '*.rst'],
        },
    include_package_data=True,
    install_requires=["numpy","scipy","pandas","cython"],
    cmdclass = {"build_ext": build_ext},
    ext_modules = [ext],
)