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Testing on the brain, a less homogenenous area #7

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BreziTasbi opened this issue Jul 15, 2024 · 1 comment
Open

Testing on the brain, a less homogenenous area #7

BreziTasbi opened this issue Jul 15, 2024 · 1 comment

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@BreziTasbi
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Since the current model cannot do much more than finding the correct value to color the spinal coord with, i am going to try to find a Healthy brain dataset in order to train a new model on it and see if the method can be more relevant on a it.
Thus i have to gather:
-A healthy brain dataset with a couple hundreds of subjects.
-A brain dataset with similar acquisition parameters (contrast, resolution) and visible lesions.

@BreziTasbi
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BreziTasbi commented Jul 18, 2024

As the brain cannot be reduced to a 32x256x256 volume, I tried to reduce lower the latent space size by a factor 2 on each dimension shape in order to allow the management of 256x256x256 volumes. Event if this actually is the recommended latent space size in original paper, I have very blurry results that cannot be considered descent counterfactual.
30

I should stick to a larger latent space size and try to center on the brain better in order to try 128x128x128. Nevertheless, it means that the entire brain cannot be processed at once.

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