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Error with graphmap installation #93

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herrroaa opened this issue Jul 17, 2018 · 2 comments
Open

Error with graphmap installation #93

herrroaa opened this issue Jul 17, 2018 · 2 comments

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@herrroaa
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Hi ,
I followed the instruction for graphmap installation, but I received an error (see below)

$ make
Makefile:100: "*** WARNING g++ minor version <7 ***"
mkdir -p obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/
g++ -static-libgcc -static-libstdc++ -D__cplusplus=201103L -I"./src/" -I"/usr/include/" -I"codebase/seqlib/src/libs/seqan-library-2.0.1/include" -I"codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/" -Icodebase/argumentparser/src -Icodebase/gindex/src -Icodebase/seqlib/src -DRELEASE_VERSION -O3 -fdata-sections -ffunction-sections -c -fmessage-length=0 -ffreestanding -fopenmp -m64 -std=c++11 -Werror=return-type -pthread -o obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.o codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.cpp
clang: error: unsupported option '-fopenmp'
make: *** [obj_linux/codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/utils.o] Error 1

@wdecoster
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Have you tried installation from (bio)conda?

@herrroaa
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It worked when I used bioconda.

Thanks

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