You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
26
Lattice="264.58862450 0.00000000 0.00000000 0.00000000 264.58862450 0.00000000 0.00000000 0.00000000 264.58862450" Properties=species:S:1:pos:R:3
c 0.00000102 -0.00000242 1.77273919
c 0.63246610 262.93251026 264.58869533
c 263.95616059 1.65611486 264.58869514
c 262.93250743 263.95616524 -0.00006534
c 1.14670307 264.07566999 263.70036917
c 1.65611690 0.63245867 -0.00006291
c 263.44192114 0.51295539 263.70036931
c 264.07566759 263.44191859 0.88825074
c 0.00000019 -0.00000065 262.81588362
c 0.51295396 1.14670273 0.88825103
h 262.10014570 264.30751367 0.62510959
h 263.13942217 2.04214911 0.62538716
h 262.54646928 263.13941971 263.96323918
h 0.28111555 262.10014031 263.96351644
h 2.48847747 0.28111351 0.62510826
h 264.30751053 2.48848158 263.96351417
h 1.96537171 263.70941606 263.06626904
h 0.80706748 264.22754426 2.42492481
h 262.62325182 0.87920706 263.06626927
h 263.70941681 262.62325285 1.52235358
h 264.22754565 263.78155762 262.16369529
h 2.04215132 1.44920559 263.96323582
h 0.36108185 0.80706968 262.16369848
h 263.78155514 0.36108089 2.42492490
h 0.87920761 1.96537186 1.52235248
h 1.44920588 262.54647754 0.62538560
This is what happens when I run the script:
Agincourt:peregrine cwagen$ python aimnet2_fail.py
/Users/cwagen/business_code/peregrine/subrepos/aimnet2calc/aimnet2calc/__init__.py:22: UserWarning: PySisiphus is not installed. AIMNet2Pysis will not be available.
warnings.warn("PySisiphus is not installed. AIMNet2Pysis will not be available.")
Downloading model file from https://github.com/zubatyuk/aimnet-model-zoo/raw/main/aimnet2/aimnet2_wb97m_0.jpt
Saved to /Users/cwagen/business_code/peregrine/subrepos/aimnet2calc/aimnet2calc/assets/aimnet2/aimnet2_wb97m_0.jpt
Atoms(symbols='C10H16', pbc=True, cell=[264.5886245, 264.5886245, 264.5886245], calculator=AIMNet2ASE(...))
Switching to DSF Coulomb for PBC
OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
{'charges': array([nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan,
nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan, nan],
dtype=float32), 'energy': array([nan])}
I'm not sure what the OMP error means; possibly something from numba? cf. numba/numba#5520. AIMNet2's worked on other periodic systems for me, so not sure what's going wrong here.
The text was updated successfully, but these errors were encountered:
When I run a PBC calculation on adamantane using the current branch of the code, I get just
nan
values back.Here's
aimnet2_fail.py
:And here's
adamantane.extxyz
(taken from the SI of the r2SCAN-3c paper):This is what happens when I run the script:
I'm not sure what the OMP error means; possibly something from
numba
? cf. numba/numba#5520. AIMNet2's worked on other periodic systems for me, so not sure what's going wrong here.The text was updated successfully, but these errors were encountered: