From 8a19e0e418d333f94456a737bdf6a32f3d52b19d Mon Sep 17 00:00:00 2001 From: amit-samal Date: Thu, 12 Sep 2024 11:51:14 +0530 Subject: [PATCH] updated dge.ipynb tutorial --- tutorials/analysis/differential_gene_expression/dge.ipynb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/tutorials/analysis/differential_gene_expression/dge.ipynb b/tutorials/analysis/differential_gene_expression/dge.ipynb index c58283d..53b8562 100644 --- a/tutorials/analysis/differential_gene_expression/dge.ipynb +++ b/tutorials/analysis/differential_gene_expression/dge.ipynb @@ -482,6 +482,8 @@ "\n", " ![Alt text](tutorial_config.png)\n", "\n", + "- In the terminal, type the following command after updating the ```/path/to/scaLR``` repository.\n", + " - ```export PYTHONPATH=\"${PYTHONPATH}:/path/to/scaLR\"```\n", "\n", "- Run either of the commands below in the terminal as per the ```dge_type``` and ```parameters```:\n", " - ```nohup /usr/bin/time --verbose python -u dge_pseudobulk_main.py --config dge_config.yaml >nohup_dge_pbk 2>&1 &``` \n",