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brainpower.yaml
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brainpower.yaml
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study_id: BrainPower
study_accession:
study_title: Brainpower
study_desc:
url:
identifier_prefix: https://includedcc.org/fhir/brainpower
dd_prefix: https://includedcc.org/fhir
output_filename: brainpower
id_colname: Participant ID
whistle_src: _entry.wstl
code_harmonization_dir: harmony/brainpower
require_official: True
curies:
http://purl.obolibrary.org/obo/hp.owl: HP
http://purl.obolibrary.org/obo/mondo.owl: MONDO
http://purl.obolibrary.org/obo/maxo.owl: MAXO
http://purl.obolibrary.org/obo/ncit.owl: NCIT
projector_lib: projector
env:
local: dev0
dev: dev0
qa: qa-kf2-inc
prod: prod-kf2-inc
dataset:
study_meta:
filename: data/tables/BrainPower/study.csv
data_dictionary:
filename: data/dd/study.csv
code_harmonization: harmony/brainpower/data-harmony.csv
study_contacts:
hidden: true
filename: data/tables/BrainPower/contacts.csv
data_dictionary:
filename: data/dd/contacts.csv
code_harmonization: harmony/brainpower/data-harmony.csv
embed:
dataset: study_meta
colname: Study Code
dataset_meta:
filename: data/tables/BrainPower/datasets.csv
data_dictionary:
filename: data/dd/dataset_meta.csv
code_harmonization: harmony/brainpower/data-harmony.csv
embed:
dataset: study_meta
colname: Study Code
participant:
filename: data/tables/BrainPower/participant.csv
data_dictionary:
filename: data/dd/participant.csv
code_harmonization: harmony/brainpower/data-harmony.csv
condition:
filename: data/tables/BrainPower/condition.csv
embed:
dataset: participant
colname: Participant External ID
data_dictionary:
filename: data/dd/condition.csv
code_harmonization: harmony/brainpower/data-harmony.csv
encounter:
hidden: true
filename: data/tables/BrainPower/encounter.csv
data_dictionary:
filename: data/dd/encounter.csv
code_harmonization: harmony/brainpower/data-harmony.csv
family:
hidden: true
#group_by: Family ID,Family Type
filename: data/tables/BrainPower/family.csv
data_dictionary:
filename: data/dd/family.csv
code_harmonization: harmony/brainpower/data-harmony.csv
specimen:
filename: None
data_dictionary:
filename: data/dd/specimen.csv
code_harmonization: harmony/brainpower/data-harmony.csv
file_manifest:
filename: None
data_dictionary:
filename: data/dd/datafile.csv
code_harmonization: harmony/brainpower/data-harmony.csv
active_tables:
ALL: true
# family: true