From b6d7ae30764e466330de836e8a5557f527341d11 Mon Sep 17 00:00:00 2001
From: Theodoros Katzalis <theodoros.katzalis@embl.de>
Date: Tue, 17 Sep 2024 14:34:44 +0200
Subject: [PATCH] Fix pre-commit ci action

---
 .github/workflows/ci.yml | 13 ++++++-------
 conda-recipe/meta.yaml   |  1 +
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index b6e9921c..1a31e127 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -15,8 +15,6 @@ jobs:
     defaults:
       run:
         shell: bash -l {0}
-    env:
-      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
     steps:
       - name: Checkout code
         uses: actions/checkout@v4
@@ -28,13 +26,14 @@ jobs:
           environment-file: environment.yml
           channel-priority: flexible
           miniforge-variant: Miniforge3
+      - name: Get the latest commit hash
+        run: |
+          echo "COMMIT_HASH=$(git log -1 --format='%H')" >> $GITHUB_ENV
       - name: Run Pre-Commit
         run: |
-          echo $BRANCH_NAME
-          echo ${{ github.event.pull_request.base.ref }}
-          echo ${{ github.event.pull_request.head.sha }}
-          git fetch origin
-          pre-commit run --from-ref origin/${{ github.event.pull_request.base.ref }} --to-ref ${{ github.event.pull_request.head.sha }}
+          echo ${{ github.ref_name }}
+          echo $COMMIT_HASH
+          pre-commit run --from-ref ${{ github.ref_name }} --to-ref $COMMIT_HASH
 
   test-dev:
     runs-on: ubuntu-latest
diff --git a/conda-recipe/meta.yaml b/conda-recipe/meta.yaml
index 3afda61c..24da47f7 100644
--- a/conda-recipe/meta.yaml
+++ b/conda-recipe/meta.yaml
@@ -53,6 +53,7 @@ test:
     - python 3.9.*
     - pytest
     - pytest-grpc
+    - pytest-timeout
     - cpuonly
     - ilastik-pytorch-version-helper-cpu
   imports: