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pytest.yaml
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name: Test
on:
pull_request:
branches: [ main ]
schedule:
- cron: "0 5 * * *"
# Cancel previous runs that have not completed
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
env:
depth: 100
jobs:
pytest:
strategy:
matrix:
os:
- macos-13
- macos-latest
- ubuntu-latest
- windows-latest
python-version:
- "3.8" # Earliest version supported by ixmp
- "3.9"
- "3.10"
- "3.11"
- "3.12" # Latest supported by ixmp
gams-version:
# Version used until 2024-07; disabled
# - 25.1.1
# First version including a macOS arm64 distribution
- 43.4.1
# commented: force a specific version of pandas, for e.g. pre-release
# testing
# pandas-version:
# - ""
# - "==2.0.0rc0"
exclude:
# Specific version combinations that are invalid / not to be used
# No arm64 distribution for this version of GAMS
# - { os: macos-latest, gams-version: 25.1.1}
# No arm64 distributions of JPype for these Pythons
- { os: macos-latest, python-version: "3.8" }
- { os: macos-latest, python-version: "3.9" }
# Redundant with macos-latest
- { os: macos-13, python-version: "3.10" }
- { os: macos-13, python-version: "3.11" }
- { os: macos-13, python-version: "3.12" }
# Example: pandas 2.0 requires Python >= 3.8
# - { python-version: "3.7", pandas-version: "==2.0.0rc0" }
fail-fast: false
runs-on: ${{ matrix.os }}
name: ${{ matrix.os }}-py${{ matrix.python-version }}
# commented: use with "pandas-version" in the matrix, above
# name: ${{ matrix.os }}-py${{ matrix.python-version }}-pandas${{ matrix.pandas-version }}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: ${{ env.depth }}
fetch-tags: true
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: pip
cache-dependency-path: "**/pyproject.toml"
- uses: ts-graphviz/setup-graphviz@v2
# TEMPORARY Work around ts-graphviz/setup-graphviz#630
if: ${{ ! startswith(matrix.os, 'macos-') }}
- uses: r-lib/actions/setup-r@v2
id: setup-r
with:
r-version: '4.2.3'
- name: Cache GAMS installer and R packages
uses: actions/cache@v4
with:
path: |
gams
${{ env.R_LIBS_USER }}
key: ${{ matrix.os }}-R${{ steps.setup-r.outputs.installed-r-version }}
restore-keys: |
${{ matrix.os }}-
- uses: iiasa/actions/setup-gams@main
with:
version: ${{ matrix.gams-version }}
license: ${{ secrets.GAMS_LICENSE }}
- name: Set RETICULATE_PYTHON
# Use the environment variable set by the setup-python action, above.
run: echo "RETICULATE_PYTHON=$pythonLocation" >> $GITHUB_ENV
shell: bash
- name: Install Python package and dependencies
# [docs] contains [tests], which contains [report,tutorial]
run: |
pip install .[docs]
# commented: use with "pandas-version" in the matrix, above
# pip install --upgrade pandas${{ matrix.pandas-version }}
# TEMPORARY Work around hgrecco/pint#2007;
# see https://github.com/iiasa/ixmp/issues/534
pip install "pint != 0.24.0" "numpy < 2"
# TEMPORARY Work around pretenders/pretenders#153
pip install "bottle < 0.13"
- name: Install R dependencies and tutorial requirements
run: |
install.packages(c("remotes", "Rcpp"))
remotes::install_cran(
c("IRkernel", "reticulate"),
dependencies = TRUE,
# force = TRUE,
)
IRkernel::installspec()
# commented: for debugging
# print(reticulate::py_config())
# reticulate::py_run_string("import os; print(os.environ)")
shell: Rscript {0}
- name: Run test suite using pytest
# FIXME: Use --numprocesses=auto once flaky tests are fixed
run: |
pytest ixmp \
-m "not performance" \
--color=yes -rA --verbose \
--cov-report=xml \
--numprocesses=1
shell: bash
- name: Upload test coverage to Codecov.io
uses: codecov/codecov-action@v4
# FIXME Limit runtime until
# https://github.com/codecov/codecov-action/issues/1316 is resolved
timeout-minutes: 1
continue-on-error: true
with:
token: ${{ secrets.CODECOV_TOKEN }} # required
pre-commit:
name: Code quality
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with: { python-version: "3.12" }
- name: Force recreation of pre-commit virtual environment for mypy
if: github.event_name == 'schedule'
run: gh cache list -L 999 | cut -f2 | grep pre-commit | xargs -I{} gh cache delete "{}" || true
env: { GH_TOKEN: "${{ github.token }}" }
- uses: pre-commit/[email protected]