From c597d32a5cede14d9376b9ac08317eff07bbeb0c Mon Sep 17 00:00:00 2001
From: jrobinso <933148+jrobinso@users.noreply.github.com>
Date: Sat, 31 Aug 2024 21:44:40 -0700
Subject: [PATCH] Display unrecognized modifications in popup text

---
 src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java b/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java
index e53ffe9a2f..6544a2003c 100644
--- a/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java
+++ b/src/main/java/org/broad/igv/sam/mods/BaseModificationSet.java
@@ -53,7 +53,7 @@ public boolean containsPosition(Integer pos) {
     public String valueString(int pos) {
         int l = (int) (100.0 * Byte.toUnsignedInt(likelihoods.get(pos)) / 255);
         return "Base modification: " +
-                ((codeValues.containsKey(modification)) ? codeValues.get(modification) : "Uknown") +  " (" + l + "%)";
+                ((codeValues.containsKey(modification)) ? codeValues.get(modification) : modification) +  " (" + l + "%)";
     }
 
     static Map<String, String> codeValues;