SG1 DBEpreparedObj function and generate generateProbs_John

[John-Ball-Cefas]

Hello,

I have pushed the current draft of two functions to my personnel folder in
SG1 (John). DBEpreparedObj has an oxygen skeleton, however generateProbs_John does
not as I believe Nuno may have also been working on the function and it may need to be
merged somehow.
DBEpreparedObj: takes raw objects and fills out probabilities based on generateProbs_John
and produces .rdata files of objs

generateProbs_John: fills out probabilities based on method col

Cheers,

John

[davidcurrie2001]

To identify style issues with the draft package, install the lintr package and then run lintr::lint_package(linters=lintr::with_defaults(object_name_linter=lintr::object_name_linter(styles = "camelCase")))
This should identify the style issues that will be flagged when committing to the package.

The styler R package (using the tidyverse style) can be used to fix some common style problems easily (e.g. spaces after commas) - there is an RStudio add-in for this that allows you easily style a selection of code or a file. Once you do this you are left with the following issues:

• variable and function names should be camelCase (not snake_case or PascalCase)
• Lines shouldn't be longer than 80 characters
• function cyclomatic complexity (I wouldn't worry about this at the moment)

I've put cleaned versions of the functions in the SG6 branch https://github.com/ices-eg/WK_RDBES/tree/SG6/WKRDB-EST2/subGroup6/icesRDBES/R