Dynamic marker table not automatically updated upon selection

[csoneson]

To reproduce:

library(scRNAseq)
library(iSEE)
library(iSEEu)
library(scater)

sce <- ReprocessedAllenData(assays = "tophat_counts", legacy = TRUE)
sce <- logNormCounts(sce, exprs_values = "tophat_counts")
sce <- runPCA(sce)
iSEE(sce, initial = list(ReducedDimensionPlot(), DynamicMarkerTable()))

• Set the Dynamic marker table to receive column selection from the Reduced dimension plot
• Select points in the Reduced dimension plot
• The Dynamic marker table doesn't update, until (e.g.) some settings for the test are changed.

Session info

R version 4.4.0 (2024-04-24)
Platform: aarch64-apple-darwin20
Running under: macOS Sonoma 14.6.1

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/Zurich
tzcode source: internal

attached base packages:
[1] stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] shiny_1.9.1                 scater_1.33.4               ggplot2_3.5.1              
 [4] scuttle_1.15.4              iSEEu_1.17.0                iSEEhex_1.7.0              
 [7] iSEE_2.17.3                 scRNAseq_2.19.1             SingleCellExperiment_1.27.2
[10] SummarizedExperiment_1.35.1 Biobase_2.65.0              GenomicRanges_1.57.1       
[13] GenomeInfoDb_1.41.1         IRanges_2.39.2              S4Vectors_0.43.2           
[16] BiocGenerics_0.51.0         MatrixGenerics_1.17.0       matrixStats_1.3.0          

loaded via a namespace (and not attached):
  [1] splines_4.4.0            later_1.3.2              BiocIO_1.15.2            bitops_1.0-8            
  [5] filelock_1.0.3           tibble_3.2.1             XML_3.99-0.17            lifecycle_1.0.4         
  [9] httr2_1.0.3              edgeR_4.3.10             doParallel_1.0.17        lattice_0.22-6          
 [13] ensembldb_2.29.1         crosstalk_1.2.1          alabaster.base_1.5.5     magrittr_2.0.3          
 [17] limma_3.61.9             sass_0.4.9               jquerylib_0.1.4          yaml_2.3.10             
 [21] metapod_1.13.0           httpuv_1.6.15            DBI_1.2.3                RColorBrewer_1.1-3      
 [25] abind_1.4-5              zlibbioc_1.51.1          purrr_1.0.2              AnnotationFilter_1.29.0 
 [29] RCurl_1.98-1.16          rappdirs_0.3.3           circlize_0.4.16          GenomeInfoDbData_1.2.12 
 [33] ggrepel_0.9.5            irlba_2.3.5.1            alabaster.sce_1.5.1      dqrng_0.4.1             
 [37] codetools_0.2-20         DelayedArray_0.31.11     DT_0.33                  tidyselect_1.2.1        
 [41] shape_1.4.6.1            farver_2.1.2             UCSC.utils_1.1.0         ScaledMatrix_1.13.0     
 [45] viridis_0.6.5            shinyWidgets_0.8.6       BiocFileCache_2.13.0     GenomicAlignments_1.41.0
 [49] jsonlite_1.8.8           GetoptLong_1.0.5         BiocNeighbors_1.23.0     iterators_1.0.14        
 [53] systemfonts_1.1.0        foreach_1.5.2            tools_4.4.0              ragg_1.3.2              
 [57] Rcpp_1.0.13              glue_1.7.0               gridExtra_2.3            SparseArray_1.5.31      
 [61] mgcv_1.9-1               dplyr_1.1.4              HDF5Array_1.33.6         gypsum_1.1.6            
 [65] shinydashboard_0.7.2     withr_3.0.1              BiocManager_1.30.23      fastmap_1.2.0           
 [69] bluster_1.15.0           rhdf5filters_1.17.0      fansi_1.0.6              shinyjs_2.1.0           
 [73] digest_0.6.37            rsvd_1.0.5               R6_2.5.1                 mime_0.12               
 [77] textshaping_0.4.0        colorspace_2.1-1         listviewer_4.0.0         RSQLite_2.3.7           
 [81] utf8_1.2.4               generics_0.1.3           hexbin_1.28.3            rtracklayer_1.65.0      
 [85] httr_1.4.7               htmlwidgets_1.6.4        S4Arrays_1.5.7           pkgconfig_2.0.3         
 [89] gtable_0.3.5             blob_1.2.4               ComplexHeatmap_2.21.0    XVector_0.45.0          
 [93] htmltools_0.5.8.1        ProtGenerics_1.37.1      rintrojs_0.3.4           clue_0.3-65             
 [97] scales_1.3.0             alabaster.matrix_1.5.5   png_0.1-8                scran_1.33.1            
[101] rjson_0.2.22             nlme_3.1-165             curl_5.2.1               shinyAce_0.4.2          
[105] cachem_1.1.0             rhdf5_2.49.0             GlobalOptions_0.1.2      BiocVersion_3.20.0      
[109] parallel_4.4.0           miniUI_0.1.1.1           vipor_0.4.7              AnnotationDbi_1.67.0    
[113] restfulr_0.0.15          pillar_1.9.0             grid_4.4.0               alabaster.schemas_1.5.0 
[117] vctrs_0.6.5              promises_1.3.0           BiocSingular_1.21.2      dbplyr_2.5.0            
[121] beachmat_2.21.5          xtable_1.8-4             cluster_2.1.6            beeswarm_0.4.0          
[125] GenomicFeatures_1.57.0   locfit_1.5-9.10          cli_3.6.3                compiler_4.4.0          
[129] Rsamtools_2.21.1         rlang_1.1.4              crayon_1.5.3             labeling_0.4.3          
[133] ggbeeswarm_0.7.2         alabaster.se_1.5.3       viridisLite_0.4.2        BiocParallel_1.39.0     
[137] munsell_0.5.1            Biostrings_2.73.1        lazyeval_0.2.2           colourpicker_1.3.0      
[141] Matrix_1.7-0             ExperimentHub_2.13.1     bit64_4.0.5              Rhdf5lib_1.27.0         
[145] statmod_1.5.0            KEGGREST_1.45.1          alabaster.ranges_1.5.2   AnnotationHub_3.13.3    
[149] fontawesome_0.5.2        igraph_2.0.3             memoise_2.0.1            bslib_0.8.0             
[153] bit_4.0.5               

[kevinrue]

The panel reacts only to its own UI inputs, but not to updates to the incoming selection.