diff --git a/README.md b/README.md index f3db141c..9ce36bcb 100644 --- a/README.md +++ b/README.md @@ -57,7 +57,7 @@ cd CytoCommunity conda create --name CytoCommunity --file requirements.txt ``` -Note that the command should be executed in the directory containing the environment.yml or requirements.txt file. And if you use the .txt file, please convert it to the UTF-8 format. Installation should take around 8 minutes. +Note that the command should be executed in the directory containing the environment.yml or requirements.txt file. And if you use the .txt file, please convert it to the UTF-8 format. Alternatively, the requirements can also be installed directly in a new conda environment: ``` @@ -91,6 +91,8 @@ conda install --yes --file requirements.txt R > install.packages("diceR") ``` + +The whole installation should take less than 20 minutes. ## Usage @@ -155,6 +157,7 @@ After this step, we will obtain a single-cell saptial map colored by identified ```bash python Step4_Visualization.py ``` +The running time for a sample in this dataset should take around 12 minutes. ### Supervised CytoCommunity @@ -203,6 +206,7 @@ After this step, we will obtain single-cell spatial maps colored by identified T ```bash python Step4_Visualization.py ``` +The running time of 10-fold cross validation for this dataset should take around 53 minutes. ## Maintainers