linux.yml

name: linux 

on:
  pull_request:
    branches: [ main ]

  push:
    branches: [ main ]
    paths-ignore:
      - '**.md'
      - '**.txt'
      - 'docs/**'
      
  # Allows to run this workflow manually from the Actions tab
  workflow_dispatch:
jobs:
  vol-pdc:
    runs-on: ubuntu-latest
    timeout-minutes: 60

    steps:
      - uses: actions/checkout@v2

      - name: Setup
        run: |
          voldir="$PWD"
          voldirbase="$(basename $(pwd))"
          cd ..
          mkdir vol-pdc-workspace
          cd vol-pdc-workspace
          workspace="$PWD"
          mv $voldir $workspace
          cd ..
          mv ./vol-pdc-workspace ./vol-pdc
          cd vol-pdc/vol-pdc 
          export VOL_DIR="$PWD"
          cd ..

      - name: Dependencies
        run: |
          sudo apt-get update
          sudo apt-get install libtool
          sudo apt install cmake
          # hdf5
          git clone https://github.com/HDFGroup/hdf5.git
          # libfabric 1.12.1
          wget https://github.com/ofiwg/libfabric/archive/refs/tags/v1.12.1.tar.gz
          tar xf v1.12.1.tar.gz
          # mercury
          git clone https://github.com/mercury-hpc/mercury.git --recursive
          # mpi
          sudo apt-get install libopenmpi-dev
          # zlib
          # sudo apt-get install zlib1g-dev 
          # python3
          sudo apt-get install python3
          # pdc
          git clone https://github.com/hpc-io/pdc.git

          
      - name: Installation
        run: |
          mydir="$PWD"
          export HDF5_DIR=$mydir/hdf5/install
          export HDF5_INCLUDE_DIR=$mydir/hdf5/install/include
          export HDF5_LIBRARY=$mydir/hdf5/install/lib/libhdf5.so
          export VOL_DIR=$mydir/vol-pdc
          export MERCURY_DIR=$mydir/mercury/install
          export LIBFABRIC_DIR=$mydir/libfabric-1.12.1/install
          export PDC_DIR=$mydir/pdc/install
          export LD_LIBRARY_PATH="$LIBFABRIC_DIR/lib:$MERCURY_DIR/lib:$PDC_DIR/lib:$VOL_DIR/install/lib:$LD_LIBRARY_PATH"
          export PATH="$LIBFABRIC_DIR/include:$LIBFABRIC_DIR/lib:$MERCURY_DIR/include:$MERCURY_DIR/lib:$PATH"
          
          # Compile HDF5
          mkdir $HDF5_DIR
          cd hdf5
          git checkout hdf5-1_14_1-2
          export HDF5_LIBTOOL=/usr/bin/libtoolize
          ./autogen.sh
          ./configure CC=mpicc --prefix=$HDF5_DIR --enable-parallel --disable-tests --disable-hl --disable-fortran 
          make -j2 && make install

          # Compile libfabric
          mkdir $LIBFABRIC_DIR
          cd $LIBFABRIC_DIR
          cd ..
          ./autogen.sh
          ./configure --disable-usnic --disable-mrail --disable-rstream --disable-perf --disable-efa --disable-psm2 --disable-psm --disable-verbs --disable-shm --disable-static --disable-silent-rules
          make -j2 && sudo make install
          make check

          # Compile Mercury
          mkdir $MERCURY_DIR
          cd $MERCURY_DIR
          git checkout v2.1.0
          cmake ../  -DCMAKE_C_COMPILER=gcc -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=ON -DNA_USE_OFI=ON -DNA_USE_SM=OFF -DMERCURY_USE_CHECKSUMS=OFF
          make -j2 && sudo make install
          ctest

          # Compile PDC
          mkdir $PDC_DIR
          cd $PDC_DIR
          git checkout develop
          cmake ../ -DBUILD_MPI_TESTING=ON -DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=ON -DCMAKE_INSTALL_PREFIX=$PDC_DIR -DPDC_ENABLE_MPI=ON -DMERCURY_DIR=$MERCURY_DIR -DCMAKE_C_COMPILER=mpicc
          make -j2 && sudo make install

          # Compile VOL-PDC
          cd $VOL_DIR
          mkdir build
          cd build
          cmake ../ -DCMAKE_INSTALL_PREFIX=$VOL_DIR/install -DHDF5_INCLUDE_DIR=$HDF5_INCLUDE_DIR -DHDF5_LIBRARY=$HDF5_LIBRARY -DBUILD_SHARED_LIBS=ON -DHDF5_DIR=$HDF5_DIR -DPDC_DIR=$PDC_DIR/share/cmake/pdc -DBUILD_EXAMPLES=ON
          make && sudo make install

          export HDF5_PLUGIN_PATH=$VOL_DIR/install/lib
          export HDF5_VOL_CONNECTOR="pdc under_vol=0;under_info={}"
          export LD_PRELOAD=$VOL_DIR/install/lib/libhdf5_vol_pdc.so
          
          # Run test
          mpirun -N 1 -n 1 -c 1 $PDC_DIR/bin/pdc_server.exe &
          mpirun -N 1 -n 1 -c 1 ./bin/h5pdc_vpicio test
          mpirun -N 1 -n 1 -c 1 $PDC_DIR/bin/close_server
          
      - name: Setup tmate session
        if: ${{ failure() }}
        uses: mxschmitt/action-tmate@v3