From 7593b7e9ead1b0843a697f7f56d6212e87e8cff0 Mon Sep 17 00:00:00 2001
From: Chooi Je Qin <42904912+jeqinchooi@users.noreply.github.com>
Date: Sat, 7 Oct 2023 19:51:14 -0400
Subject: [PATCH 1/4] Added a read_csv function that reads input and output csv
 files and writes the Pandas dataframe to console

---
 ersilia/core/tracking.py | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

diff --git a/ersilia/core/tracking.py b/ersilia/core/tracking.py
index 25da8f77..49567066 100644
--- a/ersilia/core/tracking.py
+++ b/ersilia/core/tracking.py
@@ -1,3 +1,6 @@
+import pandas as pd
+
+
 class RunTracker:
     """
     This class will be responsible for tracking model runs. It calculates the desired metadata based on a model's
@@ -6,12 +9,19 @@ class RunTracker:
     NOTE: Currently, the Splunk connection is not set up. For now, we will print tracking results to the console.
     """
 
+    def read_csv(self, file):
+        # reads csv file and returns Pandas dataframe
+        return pd.read_csv(file)
+
     def track(self, input, result, meta):
         """
         Tracks the results after a model run.
         """
 
         print("Run input file:", input)
+        print(self.read_csv(input))
+
         print("Run output file:", result)
+        print(self.read_csv(result))
 
-        print("Model metadata:", meta)
\ No newline at end of file
+        print("Model metadata:", meta)

From 8ad5c0ed8d821892bc1f33fb2211da83704e998b Mon Sep 17 00:00:00 2001
From: Chooi Je Qin <42904912+jeqinchooi@users.noreply.github.com>
Date: Sun, 8 Oct 2023 13:23:49 -0400
Subject: [PATCH 2/4] add pandas to requirementes

---
 pyproject.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pyproject.toml b/pyproject.toml
index 9eb07620..c3863d9c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -49,6 +49,7 @@ sphinx = {version = ">=5.3.0", optional = true} # For compatibility with python
 jinja2 = {version = "^3.1.2", optional = true}
 levenshtein = {version = ">=0.21.1,<0.23.0", optional = true} # For faster fuzzy search
 boto3 = "^1.28.40"
+pandas = "^2.1.1"
 
 
 [tool.poetry.extras]

From e29b28b24b96d88f98edc19e235c8133c93f69c0 Mon Sep 17 00:00:00 2001
From: Chooi Je Qin <42904912+jeqinchooi@users.noreply.github.com>
Date: Sun, 8 Oct 2023 13:25:51 -0400
Subject: [PATCH 3/4] Downgrade pandas to 2.0.3 as allowed

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index c3863d9c..624c526a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -49,7 +49,7 @@ sphinx = {version = ">=5.3.0", optional = true} # For compatibility with python
 jinja2 = {version = "^3.1.2", optional = true}
 levenshtein = {version = ">=0.21.1,<0.23.0", optional = true} # For faster fuzzy search
 boto3 = "^1.28.40"
-pandas = "^2.1.1"
+pandas = "^2.0.3"
 
 
 [tool.poetry.extras]

From 974db8c42f91819dd619e9ee8addc03a28c9af95 Mon Sep 17 00:00:00 2001
From: Chooi Je Qin <42904912+jeqinchooi@users.noreply.github.com>
Date: Sun, 8 Oct 2023 13:37:26 -0400
Subject: [PATCH 4/4] Downgrade pandas to 2.0.3 as allowed

---
 pyproject.toml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 624c526a..f64a7a5d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -34,6 +34,10 @@ validators = [
     {version="0.20.0", python="3.7.*"},
     {version="~0.21.0", python=">=3.8"},
 ]
+pandas = [
+    {version="1.2.4", python="3.7.*"},
+    {version="~1.3.0", python=">=3.8"},
+]
 h5py = "^3.7.0" # For compatibility with isaura
 loguru = "^0.6.0" # For compatibility with isaura
 pyairtable = "<2"
@@ -49,7 +53,6 @@ sphinx = {version = ">=5.3.0", optional = true} # For compatibility with python
 jinja2 = {version = "^3.1.2", optional = true}
 levenshtein = {version = ">=0.21.1,<0.23.0", optional = true} # For faster fuzzy search
 boto3 = "^1.28.40"
-pandas = "^2.0.3"
 
 
 [tool.poetry.extras]