test.yml

name: Run PyTest

on:
  pull_request:
    branches: [ master ]
  push:
    branches: [ master ]
  workflow_dispatch:

jobs:
  test:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # pin@v3.5.3

      - name: Add conda to system path
        run: echo $CONDA/bin >> $GITHUB_PATH

      - name: Source conda
        run: source $CONDA/etc/profile.d/conda.sh
        
      - name: Set Python to 3.10.10
        run:
         conda install -y python=3.10.10  

      - name: Install dependencies
        run: |
          source activate
          conda init
          conda install git-lfs -c conda-forge
          git-lfs install
          conda install gh -c conda-forge

      - name: Install ersilia
        run: |
          source activate
          python --version
          echo "After conda init"
          conda init
          python -m pip install -e .[test]

      - name: Run pytest
        run: |
          source activate          
          pip install pytest
          pytest