.gitattributes

* text=auto !eol
*.py diff=python
/SConscript -text
/__init__.py -text
algorithms/SConscript -text
algorithms/__init__.py -text
algorithms/background/SConscript -text
algorithms/background/__init__.py -text
algorithms/background/boost_python/background_ext.cc -text
algorithms/background/boost_python/helpers.cc -text
algorithms/background/glm/__init__.py -text
algorithms/background/glm/algorithm.py -text
algorithms/background/glm/boost_python/ext.cc -text
algorithms/background/glm/creator.h -text
algorithms/background/glm/robust_poisson_mean.h -text
algorithms/background/helpers.h -text
algorithms/background/simple/__init__.py -text
algorithms/background/simple/algorithm.py -text
algorithms/background/simple/boost_python/background_simple_ext.cc -text
algorithms/background/simple/boost_python/creator.cc -text
algorithms/background/simple/boost_python/modeller.cc -text
algorithms/background/simple/boost_python/outlier_rejector.cc -text
algorithms/background/simple/creator.h -text
algorithms/background/simple/modeller.h -text
algorithms/background/simple/mosflm_outlier_rejector.h -text
algorithms/background/simple/normal_outlier_rejector.h -text
algorithms/background/simple/nsigma_outlier_rejector.h -text
algorithms/background/simple/outlier_rejector.h -text
algorithms/background/simple/truncated_outlier_rejector.h -text
algorithms/background/simple/tukey_outlier_rejector.h -text
algorithms/background_lookup/__init__.py -text
algorithms/background_lookup/background_and_gain.py -text
algorithms/background_lookup/detector_noise.py -text
algorithms/centroid/SConscript -text
algorithms/centroid/__init__.py -text
algorithms/centroid/centroid.h -text
algorithms/centroid/centroid_px_to_mm.py -text
algorithms/centroid/simple/__init__.py -text
algorithms/centroid/simple/algorithm.h -text
algorithms/centroid/simple/algorithm.py -text
algorithms/centroid/simple/boost_python/simple_ext.cc -text
algorithms/filtering/SConscript -text
algorithms/filtering/__init__.py -text
algorithms/filtering/boost_python/filter_ext.cc -text
algorithms/filtering/filter.h -text
algorithms/image/SConscript -text
algorithms/image/__init__.py -text
algorithms/image/centroid/SConscript -text
algorithms/image/centroid/__init__.py -text
algorithms/image/centroid/boost_python/centroid_ext.cc -text
algorithms/image/centroid/centroid_image.h -text
algorithms/image/centroid/centroid_masked_image.h -text
algorithms/image/centroid/centroid_points.h -text
algorithms/image/connected_components/SConscript -text
algorithms/image/connected_components/__init__.py -text
algorithms/image/connected_components/boost_python/connected_components_ext.cc -text
algorithms/image/connected_components/connected_components.h -text
algorithms/image/filter/SConscript -text
algorithms/image/filter/__init__.py -text
algorithms/image/filter/boost_python/convolve.cc -text
algorithms/image/filter/boost_python/filter_ext.cc -text
algorithms/image/filter/boost_python/mean_and_variance.cc -text
algorithms/image/filter/boost_python/median.cc -text
algorithms/image/filter/boost_python/summed_area.cc -text
algorithms/image/filter/convolve.h -text
algorithms/image/filter/mean_and_variance.h -text
algorithms/image/filter/median.h -text
algorithms/image/filter/summed_area.h -text
algorithms/image/threshold/SConscript -text
algorithms/image/threshold/__init__.py -text
algorithms/image/threshold/boost_python/local.cc -text
algorithms/image/threshold/boost_python/threshold_ext.cc -text
algorithms/image/threshold/boost_python/unimodal.cc -text
algorithms/image/threshold/local.h -text
algorithms/image/threshold/unimodal.h -text
algorithms/indexing/SConscript -text
algorithms/indexing/__init__.py -text
algorithms/indexing/boost_python/fft3d.cc -text
algorithms/indexing/boost_python/indexing_ext.cc -text
algorithms/indexing/compare_orientation_matrices.py -text
algorithms/indexing/fft1d.py -text
algorithms/indexing/fft3d.h -text
algorithms/indexing/fft3d.py -text
algorithms/indexing/index.h -text
algorithms/indexing/indexer.py -text
algorithms/indexing/known_orientation.py -text
algorithms/indexing/nearest_neighbor.py -text
algorithms/indexing/real_space_grid_search.py -text
algorithms/indexing/refinement.py -text
algorithms/indexing/symmetry.py -text
algorithms/integration/SConscript -text
algorithms/integration/__init__.py -text
algorithms/integration/boost_python/corrections.cc -text
algorithms/integration/boost_python/integration_ext.cc -text
algorithms/integration/boost_python/integration_integrator_ext.cc -text
algorithms/integration/corrections.h -text
algorithms/integration/filtering.py -text
algorithms/integration/fit/__init__.py -text
algorithms/integration/fit/boost_python/ext.cc -text
algorithms/integration/fit/fitting.h -text
algorithms/integration/integrator.h -text
algorithms/integration/integrator.py -text
algorithms/integration/processor.h -text
algorithms/integration/processor.py -text
algorithms/integration/report.py -text
algorithms/integration/sum/__init__.py -text
algorithms/integration/sum/algorithm.py -text
algorithms/integration/sum/boost_python/integration_sum_ext.cc -text
algorithms/integration/sum/boost_python/summation.cc -text
algorithms/integration/sum/summation.h -text
algorithms/integration/validation.py -text
algorithms/polygon/SConscript -text
algorithms/polygon/__init__.py -text
algorithms/polygon/area.h -text
algorithms/polygon/boost_python/polygon_ext.cc -text
algorithms/polygon/boost_python/spatial_interpolation_ext.cc -text
algorithms/polygon/clip/SConscript -text
algorithms/polygon/clip/__init__.py -text
algorithms/polygon/clip/boost_python/clip_ext.cc -text
algorithms/polygon/clip/clip.h -text
algorithms/polygon/clip/cohen_sutherland.h -text
algorithms/polygon/clip/sutherland_hodgman.h -text
algorithms/polygon/spatial_interpolation.h -text
algorithms/polygon/spatial_interpolation.py -text
algorithms/profile_model/SConscript -text
algorithms/profile_model/__init__.py -text
algorithms/profile_model/factory.py -text
algorithms/profile_model/gaussian_rs/__init__.py -text
algorithms/profile_model/gaussian_rs/bbox_calculator.h -text
algorithms/profile_model/gaussian_rs/boost_python/gaussian_rs_ext.cc -text
algorithms/profile_model/gaussian_rs/calculator.py -text
algorithms/profile_model/gaussian_rs/coordinate_system.h -text
algorithms/profile_model/gaussian_rs/ideal_profile.h -text
algorithms/profile_model/gaussian_rs/mask_calculator.h -text
algorithms/profile_model/gaussian_rs/model.py -text
algorithms/profile_model/gaussian_rs/modeller.h -text
algorithms/profile_model/gaussian_rs/partiality_calculator.h -text
algorithms/profile_model/gaussian_rs/transform/__init__.py -text
algorithms/profile_model/gaussian_rs/transform/beam_vector_map.h -text
algorithms/profile_model/gaussian_rs/transform/boost_python/transform_ext.cc -text
algorithms/profile_model/gaussian_rs/transform/index_generator.h -text
algorithms/profile_model/gaussian_rs/transform/map_frames.h -text
algorithms/profile_model/gaussian_rs/transform/transform.h -text
algorithms/profile_model/modeller/__init__.py -text
algorithms/profile_model/modeller/boost_python/empirical_profile_modeller_wrapper.h -text
algorithms/profile_model/modeller/boost_python/ext.cc -text
algorithms/profile_model/modeller/boost_python/modeller.cc -text
algorithms/profile_model/modeller/boost_python/sampler.cc -text
algorithms/profile_model/modeller/circle_sampler.h -text
algorithms/profile_model/modeller/empirical_modeller.h -text
algorithms/profile_model/modeller/grid_sampler.h -text
algorithms/profile_model/modeller/modeller_interface.h -text
algorithms/profile_model/modeller/multi_experiment_modeller.h -text
algorithms/profile_model/modeller/sampler_interface.h -text
algorithms/profile_model/modeller/single_sampler.h -text
algorithms/profile_model/modeller/stereographic_projection_sampler.h -text
algorithms/refinement/README -text
algorithms/refinement/SConscript -text
algorithms/refinement/__init__.py -text
algorithms/refinement/boost_python/gallego_yezzi.cc -text
algorithms/refinement/boost_python/mahalanobis.cc -text
algorithms/refinement/boost_python/outlier_helpers.cc -text
algorithms/refinement/boost_python/parameterisation_helpers.cc -text
algorithms/refinement/boost_python/refinement_ext.cc -text
algorithms/refinement/engine.py -text
algorithms/refinement/gallego_yezzi.h -text
algorithms/refinement/outlier_detection/__init__.py -text
algorithms/refinement/outlier_detection/mcd.py -text
algorithms/refinement/outlier_detection/outlier_base.py -text
algorithms/refinement/outlier_detection/sauter_poon.py -text
algorithms/refinement/outlier_detection/tukey.py -text
algorithms/refinement/parameterisation/__init__.py -text
algorithms/refinement/parameterisation/beam_parameters.py -text
algorithms/refinement/parameterisation/crystal_parameters.py -text
algorithms/refinement/parameterisation/detector_parameters.py -text
algorithms/refinement/parameterisation/model_parameters.py -text
algorithms/refinement/parameterisation/parameter_report.py -text
algorithms/refinement/parameterisation/prediction_parameters.py -text
algorithms/refinement/parameterisation/prediction_parameters_stills.py -text
algorithms/refinement/parameterisation/scan_varying_crystal_parameters.py -text
algorithms/refinement/parameterisation/scan_varying_model_parameters.py -text
algorithms/refinement/parameterisation/scan_varying_prediction_parameters.py -text
algorithms/refinement/prediction/__init__.py -text
algorithms/refinement/prediction/managed_predictors.py -text
algorithms/refinement/refinement_helpers.py -text
algorithms/refinement/refiner.py -text
algorithms/refinement/reflection_manager.py -text
algorithms/refinement/rotation_decomposition.py -text
algorithms/refinement/stills_detector_metrology.py -text
algorithms/refinement/target.py -text
algorithms/refinement/target_stills.py -text
algorithms/refinement/tst_orientation_refinement.log -text
algorithms/refinement/weighting_strategies.py -text
algorithms/rs_mapper/SConscript -text
algorithms/rs_mapper/__init__.py -text
algorithms/rs_mapper/ext.cpp -text
algorithms/shoebox/SConscript -text
algorithms/shoebox/__init__.py -text
algorithms/shoebox/boost_python/find_overlapping.cc -text
algorithms/shoebox/boost_python/mask_builder.cc -text svneol=unset#text/plain
algorithms/shoebox/boost_python/mask_code.cc -text
algorithms/shoebox/boost_python/mask_overlapping.cc -text
algorithms/shoebox/boost_python/overload_checker.cc -text
algorithms/shoebox/boost_python/shoebox_ext.cc -text
algorithms/shoebox/find_overlapping.h -text
algorithms/shoebox/mask_builder.h -text svneol=unset#text/plain
algorithms/shoebox/mask_code.h -text
algorithms/shoebox/mask_overlapping.h -text
algorithms/shoebox/masker.py -text
algorithms/shoebox/overload_checker.h -text
algorithms/simulation/SConscript -text
algorithms/simulation/__init__.py -text
algorithms/simulation/boost_python/simulation_ext.cc -text
algorithms/simulation/generate_test_reflections.py -text
algorithms/simulation/reciprocal_space.py -text
algorithms/simulation/reciprocal_space_helpers.h -text
algorithms/simulation/utils.py -text
algorithms/spatial_indexing/SConscript -text
algorithms/spatial_indexing/__init__.py -text
algorithms/spatial_indexing/boost_python/octree.cc -text
algorithms/spatial_indexing/boost_python/quadtree.cc -text
algorithms/spatial_indexing/boost_python/spatial_indexing_ext.cc -text
algorithms/spatial_indexing/detect_collisions.h -text
algorithms/spatial_indexing/log2.h -text
algorithms/spatial_indexing/octree.h -text
algorithms/spatial_indexing/qotree.h -text
algorithms/spatial_indexing/quadtree.h -text
algorithms/spot_prediction/SConscript -text
algorithms/spot_prediction/__init__.py -text
algorithms/spot_prediction/boost_python/index_generator.cc -text
algorithms/spot_prediction/boost_python/pixel_labeller.cc -text
algorithms/spot_prediction/boost_python/ray_intersection.cc -text
algorithms/spot_prediction/boost_python/ray_predictor.cc -text
algorithms/spot_prediction/boost_python/reeke_index_generator.cc -text
algorithms/spot_prediction/boost_python/reflection_predictor.cc -text
algorithms/spot_prediction/boost_python/rotation_angles.cc -text
algorithms/spot_prediction/boost_python/scan_varying_helpers.cc -text
algorithms/spot_prediction/boost_python/scan_varying_ray_predictor.cc -text
algorithms/spot_prediction/boost_python/spot_prediction_ext.cc -text
algorithms/spot_prediction/boost_python/stills_ray_predictor.cc -text
algorithms/spot_prediction/index_generator.h -text
algorithms/spot_prediction/pixel_labeller.h -text
algorithms/spot_prediction/ray_intersection.h -text
algorithms/spot_prediction/ray_predictor.h -text
algorithms/spot_prediction/reeke.py -text
algorithms/spot_prediction/reeke_index_generator.h -text
algorithms/spot_prediction/reflection_predictor.h -text
algorithms/spot_prediction/reflection_predictor.py -text
algorithms/spot_prediction/rotation_angles.h -text
algorithms/spot_prediction/scan_varying_helpers.h -text
algorithms/spot_prediction/scan_varying_ray_predictor.h -text
algorithms/spot_prediction/stills_ray_predictor.h -text
algorithms/statistics/SConscript -text
algorithms/statistics/__init__.py -text
algorithms/statistics/boost_python/statistics_ext.cc -text
algorithms/statistics/correlation.h -text
algorithms/statistics/fast_mcd.py -text
algorithms/statistics/kolmogorov_smirnov_one_sided_distribution.h -text
algorithms/statistics/kolmogorov_smirnov_test.h -text
algorithms/statistics/kolmogorov_smirnov_two_sided_distribution.h -text
algorithms/statistics/ks_test.py -text
algorithms/statistics/poisson_test.h -text
algorithms/statistics/temp.py -text
array_family/SConscript -text
array_family/__init__.py -text
array_family/binner.h -text
array_family/boost_python/flex_binner.cc -text
array_family/boost_python/flex_centroid.cc -text
array_family/boost_python/flex_ext.cc -text
array_family/boost_python/flex_int6.cc -text
array_family/boost_python/flex_intensity.cc -text
array_family/boost_python/flex_observation.cc -text
array_family/boost_python/flex_prediction.cc -text
array_family/boost_python/flex_reflection_table.cc -text
array_family/boost_python/flex_shoebox.cc -text
array_family/boost_python/flex_shoebox_extractor.cc -text
array_family/boost_python/flex_table_suite.h -text
array_family/boost_python/flex_unit_cell.cc -text
array_family/flex.py -text
array_family/flex_table.h -text
array_family/import_scitbx_af.h -text
array_family/reflection_table.h -text
array_family/scitbx_shared_and_versa.h -text
array_family/shared.py -text
array_family/shoebox_extractor.h -text
array_family/sort_index.h -text
command_line/__init__.py -text
command_line/analyse_output.py -text
command_line/apply_mask.py -text
command_line/check_indexing_symmetry.py -text
command_line/combine_experiments.py -text
command_line/compare_mosflm_dials.py -text
command_line/compare_mosflm_xds.py -text
command_line/compare_orientation_matrices.py -text
command_line/compare_reflections.py -text
command_line/compare_xds_dials.py -text
command_line/compare_xds_dials2.py -text
command_line/create_profile_model.py -text
command_line/display_reference_profiles.py -text
command_line/dump_mtz_orientation.py -text
command_line/estimate_gain.py -text
command_line/estimate_resolution_limit.py -text
command_line/export.py -text
command_line/export_nxmx_to_mtz.py -text
command_line/export_text.py -text
command_line/extract_shoeboxes.py -text
command_line/filter_good_intensities.py -text
command_line/filter_reflections.py -text
command_line/find_hot_pixels.py -text
command_line/find_spots.py -text
command_line/find_spots_client.py -text
command_line/find_spots_server.py -text
command_line/generate_mask.py -text
command_line/generate_process_test_reflections.py -text
command_line/generate_test_reflections.py -text
command_line/generate_tutorial_text.py -text
command_line/image_viewer.py -text
command_line/import_xds.py -text
command_line/index.py -text
command_line/integrate.py -text
command_line/make_sphinx_html.py -text
command_line/merge_cbf.py -text
command_line/merge_reflection_lists.py -text
command_line/plot_reflections.py -text
command_line/plot_scan_varying_crystal.py -text
command_line/predict.py -text
command_line/print_test_reflections.py -text
command_line/reciprocal_lattice_viewer.py -text
command_line/refine.py -text
command_line/refine_bravais_settings.py -text
command_line/reflection_viewer.py -text
command_line/reindex.py -text
command_line/remove_absent_reflections.py -text
command_line/rs_mapper.py -text
command_line/scale_down_image.py -text
command_line/scale_down_images.py -text
command_line/show_extensions.py -text
command_line/show_indexed_strong.py -text
command_line/show_profiles.py -text
command_line/show_spots.py -text
command_line/simulate.py -text
command_line/simulate_rs.py -text
command_line/slice_sweep.py -text
command_line/sort_reflections.py -text
command_line/split_experiments.py -text
command_line/spot_counts_per_image.py -text
command_line/stereographic_projection.py -text
command_line/stills_detector_hybrid_refine.py -text
command_line/unify_setting.py -text
command_line/version.py -text
/config.h -text
data/__init__.py -text
data/completion_template.txt -text
data/lookup.py -text
data/multiprocessing.py -text
doc/sphinx/Makefile -text
doc/sphinx/README -text
doc/sphinx/_static/CCP4-logo-plain.png -text svneol=unset#unset
doc/sphinx/_static/LBL-logo-wide.jpeg -text
doc/sphinx/_static/LBL-logo.png -text svneol=unset#unset
doc/sphinx/_static/STFC_logo.png -text svneol=unset#unset
doc/sphinx/_static/button.css -text
doc/sphinx/_static/dials-styles.css -text
doc/sphinx/_static/dials_header.png -text svneol=unset#unset
doc/sphinx/_static/dials_icon.png -text svneol=unset#unset
doc/sphinx/_static/diamond_logo.png -text svneol=unset#unset
doc/sphinx/_templates/layout.html -text
doc/sphinx/_templates/navigation.html -text
doc/sphinx/about.rst -text
doc/sphinx/button.py -text
doc/sphinx/conf.py -text
doc/sphinx/conf_bootstrap.py -text
doc/sphinx/conf_scipy.py -text
doc/sphinx/documentation/conventions.rst -text
doc/sphinx/documentation/data_files.rst -text
doc/sphinx/documentation/index.rst -text
doc/sphinx/documentation/installation_developer.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.background.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.indexing.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.integration.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.profile_model.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.refinement.rst -text
doc/sphinx/documentation/library_reference/algorithms/dials.algorithms.spot_prediction.rst -text
doc/sphinx/documentation/library_reference/algorithms/index.rst -text
doc/sphinx/documentation/library_reference/array_family/index.rst -text
doc/sphinx/documentation/library_reference/extensions/index.rst -text
doc/sphinx/documentation/library_reference/framework/index.rst -text
doc/sphinx/documentation/library_reference/index.rst -text
doc/sphinx/documentation/library_reference/interfaces/index.rst -text
doc/sphinx/documentation/library_reference/util/index.rst -text
doc/sphinx/documentation/programs/dials_find_spots.rst -text
doc/sphinx/documentation/programs/dials_find_spots_server.rst -text
doc/sphinx/documentation/programs/dials_import.rst -text
doc/sphinx/documentation/programs/dials_index.rst -text
doc/sphinx/documentation/programs/dials_integrate.rst -text
doc/sphinx/documentation/programs/dials_refine.rst -text
doc/sphinx/documentation/programs/dials_refine_bravais_settings.rst -text
doc/sphinx/documentation/programs/dials_reindex.rst -text
doc/sphinx/documentation/programs/index.rst -text
doc/sphinx/documentation/tutorials/developer_tutorial.rst -text
doc/sphinx/documentation/tutorials/index.rst -text
doc/sphinx/documentation/tutorials/metrology_corrections.rst -text
doc/sphinx/documentation/tutorials/multi_crystal_analysis.rst -text
doc/sphinx/documentation/tutorials/multi_lattice_tutorial.rst -text
doc/sphinx/documentation/tutorials/processing_in_detail_tutorial.rst -text
doc/sphinx/figures/CC_metrology_comparison.png -text svneol=unset#unset
doc/sphinx/figures/E4.png -text
doc/sphinx/figures/centroid_diff_x.png -text svneol=unset#unset
doc/sphinx/figures/centroid_diff_x_multi_panel_lev0.png -text svneol=unset#unset
doc/sphinx/figures/centroid_diff_x_multi_panel_lev1.png -text svneol=unset#unset
doc/sphinx/figures/centroid_diff_y.png -text svneol=unset#unset
doc/sphinx/figures/centroid_diff_y_multi_panel_lev0.png -text svneol=unset#unset
doc/sphinx/figures/centroid_diff_y_multi_panel_lev1.png -text svneol=unset#unset
doc/sphinx/figures/centroid_mean_diff_vs_phi.png -text svneol=unset#unset
doc/sphinx/figures/centroid_xy_residuals.png -text svneol=unset#unset
doc/sphinx/figures/found_spot.png -text svneol=unset#unset
doc/sphinx/figures/ioversigma_vs_z.png -text svneol=unset#unset
doc/sphinx/figures/reference_corr_vs_xy_multipanel_corrected.png -text svneol=unset#unset
doc/sphinx/figures/reference_corr_vs_xy_multipanel_uncorrected.png -text svneol=unset#unset
doc/sphinx/figures/reflection_corr_vs_xy.png -text svneol=unset#unset
doc/sphinx/figures/sweep_00_corrplot.png -text svneol=unset#unset
doc/sphinx/figures/tree_01.png -text svneol=unset#unset
doc/sphinx/figures/tree_02.png -text svneol=unset#unset
doc/sphinx/figures/tree_03.png -text svneol=unset#unset
doc/sphinx/figures/unit_cell.png -text svneol=unset#unset
doc/sphinx/index.rst -text
doc/sphinx/installation.rst -text
doc/sphinx/license.rst -text
doc/sphinx/links.rst -text
doc/sphinx/publications.rst -text
doc/sphinx/workshops/DIALS-1.rst -text
doc/sphinx/workshops/dials3d.rst -text
doc/user-tutorial/getting_started_tutorial.sh -text
doc/user-tutorial/multi_lattice_tutorial.sh -text
doc/user-tutorial/tutorial.sh -text
doc/user-tutorial/tutorial.txt -text
/error.h -text
extensions/__init__.py -text
extensions/gaussian_rs_profile_model_ext.py -text
extensions/glm_background_ext.py -text
extensions/null_background_ext.py -text
extensions/simple_background_ext.py -text
extensions/simple_centroid_ext.py -text
framework/__init__.py -text
framework/env.py -text
framework/interface.py -text
installer/dials_installer.py -text
installer/dials_installer.sh -text
interfaces/__init__.py -text
/libtbx_config -text
/libtbx_refresh.py -text
model/SConscript -text
model/__init__.py -text
model/data/SConscript -text
model/data/__init__.py -text
model/data/adjacency_list.h -text
model/data/boost_python/adjacency_list.cc -text
model/data/boost_python/data_ext.cc -text
model/data/boost_python/image.cc -text
model/data/boost_python/observation.cc -text
model/data/boost_python/pixel_list.cc -text
model/data/boost_python/prediction.cc -text
model/data/boost_python/ray.cc -text
model/data/boost_python/shoebox.cc -text
model/data/boost_python/table.cc -text
model/data/image.h -text
model/data/mask_code.h -text
model/data/observation.h -text
model/data/pixel_list.h -text
model/data/prediction.h -text
model/data/ray.h -text
model/data/shoebox.h -text
model/experiment/__init__.py -text
model/experiment/profile.py -text
model/serialize/SConscript -text
model/serialize/__init__.py -text
model/serialize/boost_python/serialize_ext.cc -text
model/serialize/dump.py -text
model/serialize/imageset.py -text
model/serialize/load.py -text
model/serialize/shoebox.h -text
nexus/SConscript -text
nexus/__init__.py -text
nexus/boost_python/nexus_ext.cc -text
nexus/nxattenuator.h -text
nexus/nxbeam.h -text
nexus/nxdata.h -text
nexus/nxdetector.h -text
nexus/nxdetector_module.h -text
nexus/nxinstrument.h -text
nexus/nxmx.h -text
nexus/nxsample.h -text
nexus/reader.h -text
nexus/serialize.h -text
/phil.py -text
/run_tests.py -text
test/SConscript -text
test/__init__.py -text
test/algorithms/__init__.py -text
test/algorithms/background/simulate.py -text
test/algorithms/background/tst_background_subtraction.py -text
test/algorithms/background/tst_modeller.py -text
test/algorithms/background/tst_mosflm_outlier_rejector.py -text
test/algorithms/background/tst_normal_discriminator.py -text
test/algorithms/background/tst_outlier_rejector.py -text
test/algorithms/generate_test_reflections/__init__.py -text
test/algorithms/generate_test_reflections/tst_generate_test_refl.py -text
test/algorithms/image/connected_components/tst_connected_components.py -text
test/algorithms/image/filter/tst_mean_and_variance.py -text
test/algorithms/image/filter/tst_median.py -text
test/algorithms/image/filter/tst_summed_area.py -text
test/algorithms/image/threshold/tst_local.py -text
test/algorithms/image/tst_centroid.py -text
test/algorithms/indexing/__init__.py -text
test/algorithms/integration/profile/__init__.py -text
test/algorithms/integration/profile/tst_circle_sampler.py -text
test/algorithms/integration/profile/tst_empirical_modeller.py -text
test/algorithms/integration/profile/tst_grid_sampler.py -text
test/algorithms/integration/profile/tst_multi_experiment_modeller.py -text
test/algorithms/integration/profile/tst_profile_fitting.py -text
test/algorithms/integration/profile/tst_profile_helpers.py -text
test/algorithms/integration/profile/tst_single_sampler.py -text
test/algorithms/integration/profile/tst_stereographic_projection_sampler.py -text
test/algorithms/integration/test_integration_summation_2d.py -text
test/algorithms/integration/tst_corrections.py -text
test/algorithms/integration/tst_interface.py -text
test/algorithms/integration/tst_interpolate_profile2d.py -text
test/algorithms/integration/tst_shoebox_flattener.py -text
test/algorithms/peak_finding/tst_merge_spot_lists.py -text
test/algorithms/polygon/clip/tst_clipping.py -text
test/algorithms/polygon/tst_spatial_interpolation.py -text
test/algorithms/profile_model/tst_profile_model.py -text
test/algorithms/refinement/__init__.py -text
test/algorithms/refinement/params.py -text
test/algorithms/refinement/run_tests.py -text
test/algorithms/refinement/setup_geometry.py -text
test/algorithms/refinement/setup_minimiser.py -text
test/algorithms/refinement/tst_beam_parameters.py -text
test/algorithms/refinement/tst_crystal_parameters.py -text
test/algorithms/refinement/tst_detector_parameters.py -text
test/algorithms/refinement/tst_finite_diffs.py -text
test/algorithms/refinement/tst_finite_diffs_output_20131009.txt -text
test/algorithms/refinement/tst_hierarchical_detector_refinement.py -text
test/algorithms/refinement/tst_multi_experiment_refinement.py -text
test/algorithms/refinement/tst_multi_panel_detector_parameterisation.py -text
test/algorithms/refinement/tst_orientation_refinement.py -text
test/algorithms/refinement/tst_prediction_parameters.py -text
test/algorithms/refinement/tst_ref_passage_categorisation.py -text
test/algorithms/refinement/tst_refine_multi_stills.py -text
test/algorithms/refinement/tst_refine_multi_wedges.py -text
test/algorithms/refinement/tst_refinement_regression.py -text
test/algorithms/refinement/tst_rotation_decomposition.py -text
test/algorithms/refinement/tst_scan_varying_model_parameters.py -text
test/algorithms/refinement/tst_scan_varying_prediction_parameters.py -text
test/algorithms/refinement/tst_stills_prediction_parameters.py -text
test/algorithms/refinement/tst_stills_refinement.py -text
test/algorithms/reflection_basis/expected.p -text
test/algorithms/reflection_basis/tst_beam_vector_map.py -text
test/algorithms/reflection_basis/tst_coordinate_system.py -text
test/algorithms/reflection_basis/tst_grid_index_generator.py -text
test/algorithms/reflection_basis/tst_map_frames.py -text
test/algorithms/reflection_basis/tst_rebin_pixels.py -text
test/algorithms/reflection_basis/tst_transform.py -text
test/algorithms/shoebox/tst_bbox_calculator.py -text
test/algorithms/shoebox/tst_find_overlapping.py -text
test/algorithms/shoebox/tst_mask_foreground.py -text
test/algorithms/shoebox/tst_mask_overlapping.py -text
test/algorithms/shoebox/tst_partiality_calculator.py -text
test/algorithms/spatial_indexing/tst_collision_detection.cc -text
test/algorithms/spatial_indexing/tst_octree.cc -text
test/algorithms/spatial_indexing/tst_quadtree.cc -text
test/algorithms/spatial_indexing/tst_spatial_index.py -text
test/algorithms/spot_prediction/tst_index_generator.py -text
test/algorithms/spot_prediction/tst_ray_predictor.py -text
test/algorithms/spot_prediction/tst_reeke.py -text
test/algorithms/spot_prediction/tst_reeke_index_generator.py -text
test/algorithms/spot_prediction/tst_reeke_model.cc -text
test/algorithms/spot_prediction/tst_rotation_angles.py -text
test/algorithms/spot_prediction/tst_scan_static_reflection_predictor.py -text
test/algorithms/spot_prediction/tst_scan_varying_predictor.py -text
test/algorithms/spot_prediction/tst_scan_varying_reflection_predictor.py -text
test/algorithms/spot_prediction/tst_spot_prediction.py -text
test/algorithms/spot_prediction/tst_stills_reflection_predictor.py -text
test/algorithms/statistics/tst_fast_mcd.py -text
test/array_family/tst_flex_shoebox.py -text
test/array_family/tst_reflection_table.py -text
test/command_line/tst_check_indexing_symmetry.py -text
test/command_line/tst_combine_experiments.py -text
test/command_line/tst_compare.py -text
test/command_line/tst_create_profile_model.py -text
test/command_line/tst_export.py -text
test/command_line/tst_export_xds.py -text
test/command_line/tst_filter_reflections.py -text
test/command_line/tst_find_spots_server_client.py -text
test/command_line/tst_generate_mask.py -text
test/command_line/tst_import.py -text
test/command_line/tst_import_xds.py -text
test/command_line/tst_integrate.py -text
test/command_line/tst_merge_cbf.py -text
test/command_line/tst_merge_reflection_lists.py -text
test/command_line/tst_plot_scan_varying_crystal.py -text
test/command_line/tst_predict.py -text
test/command_line/tst_refine.py -text
test/command_line/tst_refine_bravais_settings.py -text
test/command_line/tst_rs_mapper.py -text
test/command_line/tst_show_extensions.py -text
test/command_line/tst_sort_reflections.py -text
test/command_line/tst_spot_counts_per_image.py -text
test/command_line/tst_spotfinder.py -text
test/command_line/tst_stereographic_projections.py -text
test/command_line/tst_stills_detector_hybrid_refine.py -text
test/framework/tst_interface.py -text
test/model/__init__.py -text
test/model/data/__init__.py -text
test/model/data/all_foreground_valid_data.py -text
test/model/data/tst_observation.py -text
test/model/data/tst_pixel_list.py -text
test/model/data/tst_prediction.py -text
test/model/data/tst_shoebox.py -text
test/tst_phil.py -text
test/tst_plot_reflections.py -text
test/tst_scan_varying_integration_bug.py -text
test/util/tst_nexus.py -text
test/util/tst_nexus_multi_experiment.py -text
util/SConscript -text
util/__init__.py -text
util/autocomplete.sh -text
util/command_line.py -text
util/create_dials_binary_installers.sh -text
util/export_mtz.py -text
util/export_text.py -text
util/image.py -text
util/installer.py -text
util/installer_background.png -text
util/ioutil.py -text
util/log.py -text
util/make_dist.phil -text
util/nexus/__init__.py -text
util/nexus/nx_mx.py -text
util/nexus_old.py -text
util/options.py -text
util/pprint.py -text
util/pycbf_extra.py -text
util/report.py -text
util/scale_down_array.h -text
util/scale_down_image.py -text
util/show_version.py -text
util/version.py -text
viewer/SConscript -text
viewer/__init__.py -text
viewer/boost_python/RGB_2d.cc -text
viewer/boost_python/RGB_2d_ext.cc -text
viewer/boost_tst.py -text
viewer/flex_3d_array_viewer_test.py -text
viewer/fonts_2D.h -text
viewer/from_flex_to_wxbitmap.py -text
viewer/mask_bmp_2D.h -text
viewer/rgb_2D.h -text
viewer/slice_viewer.py -text
viewer/viewer_interface.py -text
viewer/viewer_low_level_util.py -text