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Test Data Download

Test Data Download #3

name : Test Data Download
on :
# allow manual triggering
workflow_dispatch:
schedule:
# run Thursday 4:30 AM UTC
- cron: '30 4 * * 4'
env:
R_LIBS_USER: /usr/local/lib/R/site-library
LC_ALL: en_US.UTF-8
NCPUS: 2
PGHOST: postgres
CI: true
jobs:
met-data-download:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
services:
postgres:
image: mdillon/postgis:9.5
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
container:
image: pecan/depends:R4.1
steps:
# checkout source code
- name: work around https://github.com/actions/checkout/issues/766
run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
- uses: actions/checkout@v4
with:
set-safe-directory: false
# install additional tools needed
- name: install utils
run: apt-get update && apt-get install -y postgresql-client qpdf
- name: install new dependencies
run: Rscript scripts/generate_dependencies.R && cd docker/depends && Rscript pecan.depends.R
# initialize database
- name: db setup
uses: docker://pecan/db:ci
- name: add models to db
run: ./scripts/add.models.sh
# compile PEcAn code
- name: build
run: make -j1
- name: CRUNCEP
run: |
Rscript ./tests/test_met_downloads.R --settings ./tests/met_download_settings/docker.CRUNCEP.xml