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Add obo pickled graphs to docker build #367

Merged
merged 9 commits into from
Sep 23, 2024
Merged

Add obo pickled graphs to docker build #367

merged 9 commits into from
Sep 23, 2024

Commits on Sep 20, 2024

  1. Create script to generate ncbitaxon obo graph and add it to mira dock… 

    …er image
    @nanglo123
    nanglo123 committed Sep 20, 2024
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  2. Add docker volume to create directory to store pickled obo files. Adj… 

    …ust startup script to generate obo graph if not found in mounted host directory. Add shell script to build image, make host directory, and run the container.
    @nanglo123
    nanglo123 committed Sep 20, 2024
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  3. Format file

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  4. Make adding the graph to docker simpler

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  5. Revert startup.sh script

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  6. Remove duplicate script

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  7. Use correct pyobo get_version

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  8. Removed unused imports

    @nanglo123
    nanglo123 committed Sep 20, 2024
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  9. Add fallback option to download and convert ncbitaxon obo graph

    @nanglo123
    nanglo123 committed Sep 20, 2024
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