-
Notifications
You must be signed in to change notification settings - Fork 0
/
packageDescription.txt
81 lines (79 loc) · 3.78 KB
/
packageDescription.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
Package: VAST
Type: Package
Title: Vector-Autoregressive Spatio-Temporal (VAST) Model
Version: 3.7.1
Date: 2021-03-16
Authors@R: c(person(given = "James", family = "Thorson", role = c("aut", "cre"), email = "[email protected]",
comment = c(ORCID = "0000-0001-7415-1010")), person(given="Cole", family="Monnahan", role="ctb",
email="[email protected]") )
Description: VAST is an R package for conducting spatio-temporal analysis of data from multiple categories (species,
sizes, etc.), and includes both spatial and spatio-temporal variation in density for each category, with
either factor-analysis or autoregressive correlations among categories, with derived calculation of
abundance indices, center-of-gravity, and area-occupied.
Imports: deldir, stats, devtools, abind, MatrixModels, ThorsonUtilities, effects, INLA, SpatialDeltaGLMM
Depends: TMB, R (>= 3.5.0),
Suggests: testthat, knitr, rmarkdown, FishStatsUtils, pscl, tweedie, mgcv, lme4
Remotes: james-thorson/FishStatsUtils, james-thorson/utilities, nwfsc-assess/geostatistical_delta-GLMM
License: file LICENSE
LazyData: true
Encoding: UTF-8
RoxygenNote: 7.1.1
ByteCompile: true
URL: http://github.com/James-Thorson/VAST
BugReports: http://github.com/James-Thorson/VAST/issues
VignetteBuilder: knitr
RemoteType: github
RemoteHost: api.github.com
RemoteRepo: VAST
RemoteUsername: James-Thorson-NOAA
RemoteRef: main
RemoteSha: 339db318558073ce36098ff56d1e745513313ae7
GithubRepo: VAST
GithubUsername: James-Thorson-NOAA
GithubRef: main
GithubSHA1: 339db318558073ce36098ff56d1e745513313ae7
NeedsCompilation: no
Packaged: 2021-04-08 23:27:56 UTC; aallyn
Author: James Thorson [aut, cre] (<https://orcid.org/0000-0001-7415-1010>), Cole Monnahan [ctb]
Maintainer: James Thorson <[email protected]>
Built: R 4.0.4; ; 2021-04-08 23:27:57 UTC; unix
-- File: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/VAST/Meta/package.rds
Package: FishStatsUtils
Type: Package
Title: Utilities (shared code and data) for FishStats spatio-temporal modeling toolbox
Version: 2.9.1
Date: 2021-03-16
Authors@R: c(person(given = "James", family = "Thorson", role = c("aut", "cre"), email = "[email protected]",
comment = c(ORCID = "0000-0001-7415-1010")) )
Description: FishStatsUtils contains utilities (shared code and data) used by multiple packages (VAST,
SpatialDeltaGLMM, MIST, Spatial_FA, SpatialDFA, surplus_production, EOFR) that are designed for
spatio-temporal analysis of ecological data.
Imports: graphics, utils, mapproj, maptools, deldir, RANN, stats, colorspace, RandomFields, RandomFieldsUtils, shape,
devtools, mixtools, sp, plotKML, plotrix, TMB, MatrixModels, rgdal, ThorsonUtilities, TMBhelper, abind,
corpcor, pander, rnaturalearth, rnaturalearthdata, formatR, splancs, DHARMa, viridisLite
Depends: R (>= 3.5.0)
Suggests: testthat
Remotes: james-thorson/utilities, kaskr/TMB_contrib_R/TMBhelper
License: GPL-3
LazyData: yes
BuildVignettes: yes
Encoding: UTF-8
RoxygenNote: 7.1.1
URL: http://github.com/james-thorson/FishStatsUtils
BugReports: http://github.com/james-thorson/FishStatsUtils/issues
RemoteType: github
RemoteHost: api.github.com
RemoteRepo: FishStatsUtils
RemoteUsername: James-Thorson-NOAA
RemoteRef: HEAD
RemoteSha: 80d5cbeabc8de7888b5065ede6e4489283aa1d4d
GithubRepo: FishStatsUtils
GithubUsername: James-Thorson-NOAA
GithubRef: HEAD
GithubSHA1: 80d5cbeabc8de7888b5065ede6e4489283aa1d4d
NeedsCompilation: no
Packaged: 2021-04-08 23:27:30 UTC; aallyn
Author: James Thorson [aut, cre] (<https://orcid.org/0000-0001-7415-1010>)
Maintainer: James Thorson <[email protected]>
Built: R 4.0.4; ; 2021-04-08 23:27:35 UTC; unix
-- File: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/FishStatsUtils/Meta/package.rds