diff --git a/Envs/bwa.yaml b/Envs/bwa.yaml new file mode 100644 index 0000000..e4c8735 --- /dev/null +++ b/Envs/bwa.yaml @@ -0,0 +1,4 @@ +channels: + - bioconda +dependencies: + - bwa=0.7.17 diff --git a/Envs/gatk4.yaml b/Envs/gatk4.yaml new file mode 100644 index 0000000..f33f50d --- /dev/null +++ b/Envs/gatk4.yaml @@ -0,0 +1,4 @@ +channels: + - bioconda +dependencies: + - gatk4=4.2.0.0 diff --git a/Envs/parallel-fastq-dump.yaml b/Envs/parallel-fastq-dump.yaml new file mode 100644 index 0000000..17d3342 --- /dev/null +++ b/Envs/parallel-fastq-dump.yaml @@ -0,0 +1,5 @@ +channels: + - bioconda +dependencies: + - parallel-fastq-dump=0.6.3 + - sra-tools=2.10 diff --git a/Envs/samtools.yaml b/Envs/samtools.yaml new file mode 100644 index 0000000..ba0a8b8 --- /dev/null +++ b/Envs/samtools.yaml @@ -0,0 +1,4 @@ +channels: + - bioconda +dependencies: + - samtools=1.10 diff --git a/Envs/trimgalore.yaml b/Envs/trimgalore.yaml new file mode 100644 index 0000000..0225377 --- /dev/null +++ b/Envs/trimgalore.yaml @@ -0,0 +1,4 @@ +channels: + - bioconda +dependencies: + - trim-galore=0.6.7