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Updating Repo #77

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gwaybio opened this issue May 18, 2018 · 0 comments
Open

Updating Repo #77

gwaybio opened this issue May 18, 2018 · 0 comments

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@gwaybio
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gwaybio commented May 18, 2018

The embargo on the data has lifted (see #75) and the paper has been published (See release v2.2).

Therefore, it is time to update the repo. I will use this time to update the following:

  1. Adding all of the results of each analysis.
  2. Refactor code (focusing on scripts/pancancer_classifier.py)
  3. Updating gene identifiers in gene expression data.
  • This will require an updating to entrez gene ids to maintain consistency in other applications

There are also some research questions that will need to eventually be addressed.

  1. Transforming data to match distribution of training - removing the requirement for normalizing population of samples and permitting classification of a single sample.

I will use this issue to track thoughts, but this project to track progress

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