From e547d58877098fd9766064f44d2a2067915e51ed Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 15:30:08 -0400 Subject: [PATCH 1/8] add therapeutics manuscript --- content/manual-references.json | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/content/manual-references.json b/content/manual-references.json index 95fc9bf9f..d75b68620 100644 --- a/content/manual-references.json +++ b/content/manual-references.json @@ -1061,6 +1061,27 @@ "title": "Vaccine Development Strategies for SARS-CoV-2", "URL": "https://greenelab.github.io/covid19-review/v/d9d90fd7e88ef547fb4cbed0ef73baef5fee7fb5/#vaccine-development-strategies-for-sars-cov-2" }, +{ + "type": "article-journal", + "id": "individual-therapeutics", + "author": [ + { + "literal": "COVID-19 Review Consortium" + } + ], + "issued": { + "date-parts": [ + [ + 2021, + 4, + 30 + ] + ] + }, + "container-title": "Manubot", + "title": "Identification and Development of Therapeutics for COVID-19", + "URL": "https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/#identification-and-development-of-therapeutics-for-covid-19" +}, { "type": "article-journal", "id": "individual-evolution", From 15522221507e451f988e908a8ee9640b053f695d Mon Sep 17 00:00:00 2001 From: Anthony Gitter Date: Fri, 30 Apr 2021 14:36:42 -0500 Subject: [PATCH 2/8] Remove individual-therapeutics --- content/manual-references.json | 21 --------------------- 1 file changed, 21 deletions(-) diff --git a/content/manual-references.json b/content/manual-references.json index d75b68620..95fc9bf9f 100644 --- a/content/manual-references.json +++ b/content/manual-references.json @@ -1061,27 +1061,6 @@ "title": "Vaccine Development Strategies for SARS-CoV-2", "URL": "https://greenelab.github.io/covid19-review/v/d9d90fd7e88ef547fb4cbed0ef73baef5fee7fb5/#vaccine-development-strategies-for-sars-cov-2" }, -{ - "type": "article-journal", - "id": "individual-therapeutics", - "author": [ - { - "literal": "COVID-19 Review Consortium" - } - ], - "issued": { - "date-parts": [ - [ - 2021, - 4, - 30 - ] - ] - }, - "container-title": "Manubot", - "title": "Identification and Development of Therapeutics for COVID-19", - "URL": "https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/#identification-and-development-of-therapeutics-for-covid-19" -}, { "type": "article-journal", "id": "individual-evolution", From 73dd4e9a65b3f8900d68514cdf2925c81324668f Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 15:37:30 -0400 Subject: [PATCH 3/8] initial add of dhimmel --- content/metadata.yaml | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/content/metadata.yaml b/content/metadata.yaml index 13f99f66a..ba73b1b84 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -1243,3 +1243,19 @@ authors: order: 0 contributions: - Writing - Review & Editing + - github: dhimmel + name: Daniel S. Himmelstein + initials: DSH + orcid: 0000-0002-3012-7446 + twitter: dhimmel + email: daniel.himmelstein@gmail.com + affiliations: + - Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America + - Related Sciences + funders: GBMF4552 + manuscripts: + methods: + order: 0 + contributions: + - Software + From e0356b782eb0969775f0982825badf3be297c65d Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 15:41:03 -0400 Subject: [PATCH 4/8] match whitespace --- content/metadata.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/content/metadata.yaml b/content/metadata.yaml index ba73b1b84..3d9264c6d 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -1243,7 +1243,8 @@ authors: order: 0 contributions: - Writing - Review & Editing - - github: dhimmel + - + github: dhimmel name: Daniel S. Himmelstein initials: DSH orcid: 0000-0002-3012-7446 From ca8fe62b438997571c44791424c4d2ab62c39396 Mon Sep 17 00:00:00 2001 From: Anthony Gitter Date: Fri, 30 Apr 2021 14:46:50 -0500 Subject: [PATCH 5/8] Add three other individual sections to refs --- content/manual-references.json | 63 ++++++++++++++++++++++++++++++++++ 1 file changed, 63 insertions(+) diff --git a/content/manual-references.json b/content/manual-references.json index 95fc9bf9f..5af9d8907 100644 --- a/content/manual-references.json +++ b/content/manual-references.json @@ -1081,5 +1081,68 @@ "container-title": "Manubot", "title": "Evolutionary and Genomic Analysis of SARS-CoV-2", "URL": "https://greenelab.github.io/covid19-review/v/910dd7b7479f5336a1c911c57446829bef015dbe/#evolutionary-and-genomic-analysis-of-sars-cov-2" +}, +{ + "type": "article-journal", + "id": "individual-diagnostics", + "author": [ + { + "literal": "COVID-19 Review Consortium" + } + ], + "issued": { + "date-parts": [ + [ + 2021, + 4, + 30 + ] + ] + }, + "container-title": "Manubot", + "title": "Diagnostics", + "URL": "https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/#diagnostics" +}, +{ + "type": "article-journal", + "id": "individual-inequality", + "author": [ + { + "literal": "COVID-19 Review Consortium" + } + ], + "issued": { + "date-parts": [ + [ + 2021, + 4, + 30 + ] + ] + }, + "container-title": "Manubot", + "title": "Social Factors Influencing COVID-19 Exposure and Outcomes", + "URL": "https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/#social-factors-influencing-covid-19-exposure-and-outcomes" +}, +{ + "type": "article-journal", + "id": "individual-methods", + "author": [ + { + "literal": "COVID-19 Review Consortium" + } + ], + "issued": { + "date-parts": [ + [ + 2021, + 4, + 30 + ] + ] + }, + "container-title": "Manubot", + "title": "An Open-Publishing Response to the COVID-19 Infodemic", + "URL": "https://greenelab.github.io/covid19-review/v/32afa309f69f0466a91acec5d0df3151fe4d61b5/#an-open-publishing-response-to-the-covid-19-infodemic" } ] From 54dc808ec2f2a467bf520f72e3e25804130c5c53 Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 15:50:34 -0400 Subject: [PATCH 6/8] add ambiguous COI --- content/metadata.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/content/metadata.yaml b/content/metadata.yaml index 3d9264c6d..f0915e5b3 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -1254,6 +1254,9 @@ authors: - Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America - Related Sciences funders: GBMF4552 + coi: + string: "Employee of Related Sciences, others TBD" + lastapproved: !!str 2021-04-30 manuscripts: methods: order: 0 From 63b037d48686f88cef1b14cf248c13447fbb1c35 Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 17:07:17 -0400 Subject: [PATCH 7/8] confirmed COI with Daniel --- content/metadata.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/content/metadata.yaml b/content/metadata.yaml index f0915e5b3..f4b4bcb9f 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -1255,7 +1255,7 @@ authors: - Related Sciences funders: GBMF4552 coi: - string: "Employee of Related Sciences, others TBD" + string: "None" lastapproved: !!str 2021-04-30 manuscripts: methods: From cb27061fa4dae6c56578576b5abec009651a6b3e Mon Sep 17 00:00:00 2001 From: HM Rando Date: Fri, 30 Apr 2021 17:14:55 -0400 Subject: [PATCH 8/8] fix mprobson formatting --- content/metadata.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/content/metadata.yaml b/content/metadata.yaml index 13f99f66a..0c32b91d1 100644 --- a/content/metadata.yaml +++ b/content/metadata.yaml @@ -127,6 +127,7 @@ authors: coi: string: "None" lastapproved: !!str 2020-11-12 + manuscripts: methods: order: 0 contributions: