From 30e9e1cde07c53a0a58a226babe85e067c503936 Mon Sep 17 00:00:00 2001
From: lucl13 <lucl13@163.com>
Date: Mon, 5 Aug 2024 00:36:56 -0400
Subject: [PATCH] added Sphinx workflows

---
 .github/workflows/sphinx.yml                  |  24 ++++++++++++++++++
 docs/build/doctrees/environment.pickle        | Bin 643400 -> 643112 bytes
 .../nbsphinx/tutorials/01_load_data.ipynb     |   2 +-
 .../doctrees/tutorials/01_load_data.doctree   | Bin 22209 -> 21921 bytes
 .../_sources/tutorials/01_load_data.ipynb.txt |   2 +-
 docs/build/html/searchindex.js                |   2 +-
 docs/build/html/tutorials/01_load_data.html   |   2 +-
 docs/build/html/tutorials/01_load_data.ipynb  |   2 +-
 docs/requirements.txt                         |   2 ++
 docs/source/tutorials/01_load_data.ipynb      |   2 +-
 10 files changed, 32 insertions(+), 6 deletions(-)
 create mode 100644 .github/workflows/sphinx.yml
 create mode 100644 docs/requirements.txt

diff --git a/.github/workflows/sphinx.yml b/.github/workflows/sphinx.yml
new file mode 100644
index 0000000..1e63e92
--- /dev/null
+++ b/.github/workflows/sphinx.yml
@@ -0,0 +1,24 @@
+name: "Sphinx: Render docs"
+
+on: push
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+    - uses: actions/checkout@v4
+    - name: Build HTML
+      uses: ammaraskar/sphinx-action@master
+    - name: Upload artifacts
+      uses: actions/upload-artifact@v4
+      with:
+        name: html-docs
+        path: docs/build/html/
+    - name: Deploy
+      uses: peaceiris/actions-gh-pages@v3
+      if: github.ref == 'refs/heads/main'
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: docs/build/html
\ No newline at end of file
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index 40b9ba16fd48a56eb048dfa1b87956d564e7ff02..5624dae7839e40e75a573566ad50d92eade33280 100644
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\ No newline at end of file
diff --git a/docs/build/html/tutorials/01_load_data.html b/docs/build/html/tutorials/01_load_data.html
index 59c3029..725098f 100644
--- a/docs/build/html/tutorials/01_load_data.html
+++ b/docs/build/html/tutorials/01_load_data.html
@@ -96,7 +96,7 @@
              
   <section id="01_load_data">
 <h1>01_load_data<a class="headerlink" href="#01_load_data" title="Link to this heading"></a></h1>
-<p>In principle, FEATHER can accept the output from any HDS/MS software. Currently, it only supports the output from HDExaminer. Future versions will include support for other common software, such as HDX Workbench.</p>
+<p>In principle, FEATHER can accept the output from any HX/MS software.</p>
 <p>There are two types of input files: 1. Peptide pools with centroid deuteration values 2. Raw mass spectra (deconvoluted)</p>
 <section id="Read-the-centroid-data">
 <h2>Read the centroid data<a class="headerlink" href="#Read-the-centroid-data" title="Link to this heading"></a></h2>
diff --git a/docs/build/html/tutorials/01_load_data.ipynb b/docs/build/html/tutorials/01_load_data.ipynb
index 622ea99..8dbb41a 100644
--- a/docs/build/html/tutorials/01_load_data.ipynb
+++ b/docs/build/html/tutorials/01_load_data.ipynb
@@ -11,7 +11,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "In principle, FEATHER can accept the output from any HDS/MS software. Currently, it only supports the output from HDExaminer. Future versions will include support for other common software, such as HDX Workbench.\n",
+    "In principle, FEATHER can accept the output from any HX/MS software. \n",
     "\n",
     "There are two types of input files:\n",
     "1. Peptide pools with centroid deuteration values\n",
diff --git a/docs/requirements.txt b/docs/requirements.txt
new file mode 100644
index 0000000..7a43950
--- /dev/null
+++ b/docs/requirements.txt
@@ -0,0 +1,2 @@
+furo==2021.11.16
+nbsphinx=0.9.3
\ No newline at end of file
diff --git a/docs/source/tutorials/01_load_data.ipynb b/docs/source/tutorials/01_load_data.ipynb
index 622ea99..8dbb41a 100644
--- a/docs/source/tutorials/01_load_data.ipynb
+++ b/docs/source/tutorials/01_load_data.ipynb
@@ -11,7 +11,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "In principle, FEATHER can accept the output from any HDS/MS software. Currently, it only supports the output from HDExaminer. Future versions will include support for other common software, such as HDX Workbench.\n",
+    "In principle, FEATHER can accept the output from any HX/MS software. \n",
     "\n",
     "There are two types of input files:\n",
     "1. Peptide pools with centroid deuteration values\n",