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Added the workflow file for sample data #27

Added the workflow file for sample data

Added the workflow file for sample data #27

Workflow file for this run

name: Test
on:
- push
- pull_request
jobs:
Test:
name: Test nn4dms
runs-on: ${{ matrix.os }}
continue-on-error: true
strategy:
matrix:
os: [ubuntu-latest]
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Install conda environment
uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: active_learning_dd
environment-file: conda_cpu_env.yml
auto-activate-base: false
miniconda-version: 'latest'
# Log conda environment contents
- name: Log conda environment
shell: bash --login {0}
run: conda list
# Tests that the regression training code runs in the conda environment
- name: Test BT_Clustering
shell: bash --login {0}
run: python utils/generate_bt_clustering.py --csv_file_or_dir=datasets/sample_data/training_data/iter_{}.csv --output_dir=datasets/sample_data/training_data --feature_name="Morgan FP_2_1024" --cutoff=0.4 --dist_function=tanimoto_dissimilarity --process_count=2 --index_name="Index ID"
# Tests that inference notebook can execute in the conda environment
- name: Test Simulation Runner
shell: bash --login {0}
run: python chtc_runners/simulation_runner.py --pipeline_params_json_file=param_configs/sample_data_config.json --nbs_params_json_file=param_configs/ClusterBasedWCSelector_params_reduced.json --exploration_strategy=weighted --iter_max=5 --process_num=0 --batch_size_index=0 --rnd_seed=0 --no-random_param_sampling --precompute_dissimilarity_matrix