CHANGES.md

Changelog

0.18.10 (Beta)

Bug Fixes:

• Improved error handling in WorkspaceManager.copy_data
• Fixed WorkspaceManager.update_config not being able to also upload a WDL

Other Changes:

• Changed URL for lapdog.cloud.utils.validate_permissions to use new storage API endpoint
• Updated some dependencies
• Updated some dependencies in Cromwell image. This change is live and affects all Lapdog clients v0.17.0 and later
• Cromwell is now supposed to upload large output files as composite objects, but this behavior is inconsistent. I have informed the Cromwell team of this problem.
• Updated UI dependencies. Please re-run lapdog ui --install to update your UI dependencies

0.18.9 (Beta)

Bug Fixes:

• Fixed a bug preventing workspaces created before July 18th 2019 from functioning with Lapdog. If you continue to experience permissions errors despite this fix, you should clone the workspace. New workspaces will function normally

Patch Contents

• Updated submit to v11
• Updated register to v5
• Updated the self update endpoint to v4. This resolves a minor security issue which would allow individuals to update projects to the latest version of Lapdog ahead of schedule.
• Redacted all previous versions of the self-update endpoint

0.18.8 (Beta)

Bug Fixes:

• Fixed a bug preventing Broad users from registering with new namespaces or authenticating new buckets in the Lapdog API

Other Changes:

• Added ability to change rootEntityType from the methods page in the UI

Patch Contents

• Updated submit to v10
• Updated register to v5

0.18.7 (Beta)

Bug Fixes:

• Fixed a bug preventing some namespaces from running jobs
• Fixed a bug preventing automatic updates over the v2 api

Other changes:

• Improved API security by switching to custom Lapdog OAuth tokens. Currently this is only supported by Broad accounts. Non-broad accounts will continue to use standard Google application-default credentials when authenticating through the Lapdog API
• Updated execution service to use new LifeSciences api. Cromwell currently does not support this API, so individual workflows will still be launched using the old Genomics api
• Patching process now checks that the proper services are enabled
• Automatic updates handled by new update v3 will use the LifeSciences API
• Fixed a bug which caused Cromwell to crash during shutdown when running large submissions

Patch contents

• Deprecation Notice: Submit api v3-v8 are deprecated and will be removed when Google finalizes their transition from the Genomics api to the LifeSciences api. These versions of the submit endpoint were used by lapdog versions 0.14.0 - 0.18.6
• Updated submit to v9
• Updated update to v3

0.18.6 (Beta)

Bug Fixes:

• Fixed a bug preventing certain entity expressions always evaluating to an empty list
• Fixed a bug preventing multiple submissions within the same authorized domain workspace. There are no longer any concurrency limits within authorized domains

Other Changes:

• Added stackdriver logs to all endpoints. These logs will contain information about the request (IP, physical location, etc), any exceptions, as well as other details regarding function operation. All endpoint versions have been increased

Additional Cromwell Changes

These additional changes have been applied to Lapdog's Cromwell images. These changes have been applied to the Cromwell images used by Lapdog versions 0.17.0 - present

• Updated to python3
• Removed some unnecessary code
• Updated to Cromwell 46 (improves PAPI error handling)
• Added stackdriver logging

Patch Contents

All cloud endpoint versions were updated to incorporate the new logs

0.18.5 (Beta)

Other Changes:

• Updated ui dependencies. Please run lapdog ui --install to reinstall the UI after updating to this version of lapdog
• Lapdog can now run method configurations which do not reference the entity data model. Simply provide a dummy entity and type to run the submission
• Updated some python dependencies

0.18.4 (Beta)

Bug Fixes:

• Fixed a bug preventing cache population

0.18.3 (Beta)

Bug Fixes:

• Fixed 5XX errors during authorized domain bypass

Other Changes:

• Improved UI feedback when creating new workspaces

0.18.2 (Beta)

Bug Fixes:

• Fixed inability to create authorized domain bypass workspaces
• Fixed creation of fake data model samples in bypass workspaces
• Fixed bad reference type when executing bypass jobs
• Fixed copy_to_workspace crashing if files are copied to the same location
• Fixed cache population not working

0.18.1 (Beta)

Bug Fixes:

• Fixed cost estimation sometimes crashing with UTC errors
• Reduced probability of broken proxy account emails

0.18.0 (Beta)

Breaking Changes:

• Switched to only accept "standardized references" for all functions:
  • Workspaces are always referenced as a single namespace/workspace string. Ie: lapdog.WorkspaceManager('namespace/workspace')
  • Method Configurations are always referenced as a single namespace/name string. Ie: WorkspaceManager.get_config('namespace/name')
    • Incomplete name allowed if unique
  • Methods are always referenced as a single namespace/method/version string. Ie: WorkspaceManager.get_wdl('namespace/method/version')
    • Incomplete namespace/method references the latest version
    • Incomplete method only allowed if unique
    • Dockstore methods allowed in form dockstore.org/repo/method or dockstore.org/repo/method/version
• WorkspaceManager properties removed (.samples, .attributes, etc). Use .get_samples(), .get_attributes(), etc
• WorkspaceManager.firecloud_workspace renamed to WorkspaceManager.get_workspace_metadata()
• WorkspaceManager.entity_types renamed to WorkspaceManager.get_entity_types()

Bug Fixes:

• Fixed cache switching to offline mode unnecessarily. Cache now only switches offline on failed writes

New Features:

• Automatic Engine updates enabled
• Added WorkspaceManager.copy_data() to copy all files referenced in the workspace's data model into the workspace bucket

Other Changes:

• Improved code readability for all 0 who read the code
• Improved performance of adapter.update()
• Dalmatian Cache layer migrated back into lapdog
• Improved WorkspaceManager.mop()
• Updated dalmatian to 0.0.17

Patch Contents

This patch introduces automatic updates. After you have patched your namespace to 0.18.0, your namespace will receive automatic updates. Hopefully, you will not have to apply manual updates any more. Also updates role definition for Engine Admin

0.17.7 (Beta)

Bug Fixes:

• Fixed WDLs not being properly cached by WorkspaceManager.populate_cache()

0.17.6 (Beta)

Other Changes:

• Updated dalmatian to 0.0.14 (bugfixes)
• Minor UI improvements

0.17.5 (Beta)

Other Changes:

• Updated Dalmatian version

0.17.4 (Beta)

New Features:

• Added Clone Workspace button to the workspace page in the UI

Other Changes:

• Improved dockstore method handling

0.17.3 (Beta)

Bug Fixes:

• Added support for Dockstore methods
• Fixed sometimes breaking proxy service accounts during workspace creation

Other Changes:

• Cromwell logs should now always be uploaded, even if the submission crashes
• Added a spinner while launching submissions
• Submission errors now include error-details key in submission.json

0.17.2 (Beta)

Bug Fixes:

• Fixed a bug with certain expressions not evaluating correctly

0.17.1 (Beta)

Deprecation Warning: lapdog.gateway.get_access_token() is now deprecated and will be removed when Lapdog shifts to full release. If you need to authenticate as the current user, use lapdog.gateway.get_user_session(), which returns a prebuilt AuthorizedSession object which can be used to make authenticated requests on behalf of the user. This function only attaches the OAuth scopes needed by Lapdog, so if you need additional scopes, use lapdog.cloud.utils.generate_default_session(), which allows requesting arbitrary scopes

Deprecation Warning: Changing the query_limit parameter to lapdog.WorkspaceManager.execute() is no longer supported and will be removed when Lapdog shifts to full release.

New Features:

• Added a workaround for Authorized Domain workspaces

Other Changes:

• Restricted usage scopes of access tokens
• Standardized functions for getting current gcloud accounts
• From now on, newly deployed Lapdog functions will not support unauthenticated access. This will not change lapdog's api, however individuals calling Lapdog engine functions outside the client will need to pass an Authorization header, or use lapdog.gateway.get_user_session, which returns a requests.session object with your authorization token autofilled

0.17.0 (Beta)

Bug Fixes:

• Fixed a bug which sometimes prevented functions from being deployed during a patch
• Fixed a bug in the preflight system which sometimes displayed outdated preflight results
• Fixed a missing success notification when uploading new method configurations

New Features:

• Lapdog now supports an optional per-workspace call-cache

Other Changes:

• Updated Dalmatian to 0.0.11
• Updated UI Dependencies

Additional Cromwell Changes

These additional changes have also been backported to the global Cromwell images used by Lapdog versions 0.15.0-0.16.4.

• Significantly improved latency of Cromwell log
• Updated to Cromwell 41. This allows worker VMs to be labeled by their parent submission id

Patch Contents:

• Updated submit endpoint to v7 to accommodate call-cache

0.16.4 (Beta)

Other Changes:

• Updated resolve internal endpoint to v4 (no patch necessary)
  • This change raises requirements for inserting a namespace resolution
  • Redacted previous versions
• Added additional checks at the start of engine initialization to check required Firecloud permissions prior to making any changes

Patch Contents

This patch is non-critical and does not contain any endpoint updates.

• Added role definition for Engine_Admin role

0.16.3 (Beta)

Bug Fixes:

• Fixed an offline workspace with a cold cache disabling ui (#87)
• Fixed page navigation logging an error to the console during workspace sync

Other Changes:

• Updated required version of Google Cloud SDK to 241.0.0
• During startup, lapdog will print any critical alerts to the terminal
• Lowered the offline threshold for WorkspaceManager.execute to 100 entities
• Significant speed improvements to WorkspaceManager.execute when preparing a submission in offline mode
• Aborting a submission now generates a Hound log entry
• UI link previews timeout after 10s and display a fallback dialog
• Speed improvements to WorkspaceManager.mop, WorkspaceManager.list_submissions, and UI link previews

0.16.2 (Beta)

Bug Fixes:

• Critical: Fixed an error preventing new function deployments
• Fixed a bug preventing new Engine initialization

Other Changes:

• lapdog initialize-project now checks required gcloud version first
• Updated Dalmatian to latest
• Updated resolve internal endpoint to v3 (no patch necessary)

Patch Contents

• Updated submit to v6
• Updated abort to v2
• Updated register to v3
• Updated signature to v2
• Updated query to v2
• Updated quotas to v4

0.16.1 (Beta)

New Features:

• Added global alert system to Lapdog UI, allowing for real-time updates to be posted by Lapdog maintainers

Bug Fixes:

• Fixed bucket previews not being able to copy paths to clipboard
• Fixed pagination allowing you to get to blank pages
• Fixed some CSS scoping issues

0.16.0 (Beta)

Breaking Changes:

• safe_getblob renamed to strict_getblob
• lapdog.operations.Operator class removed and integrated with dalmatian.WorkspaceManager and lapdog.WorkspaceManager
• removed attribute .operator from lapdog.WorkspaceManager
• lapdog.WorkspaceManager.operator.get_entities_df renamed to lapdog.WorkspaceManager._get_entities_internal
• lapdog.Workspacemanager.operator.pending renamed to lapdog.WorkspaceManager.pending_operations
  • Removed previous lapdog.WorkspaceManager.pending_operations property
• lapdog.WorkspaceManager.execute_preflight renamed to lapdog.WorkspaceManager.preflight
• lapdog.WorkspaceManager.operator.get_config_detail renamed to lapdog.WorkspaceManager.get_config
• lapdog.WorkspaceManager.prepare_*_df renamed to lapdog.WorkspaceManager.upload_entity_metadata
• Removed module lapdog.operations
• Removed lapdog.provenance. Use lapdog.WorkspaceManager.attribute_provenance and lapdog.WorkspaceManager.entity_provenance

New Features:

• Added a previewer for gs:// links, enabled for most UI elements

Other Changes

• Phased out the Terra UI
• lapdog.WorkspaceManager.preflight now returns a namedtuple
• lapdog.WorkspaceManager now uses Hound to log changes to workspace
• lapdog.provenance now used Hound to parse provenance

0.15.13 (Beta)

Bug Fixes:

• Fixed a missing file in the UI framework

0.15.12 (Beta)

Bug Fixes:

• Fixed a bug preventing lapdog from automatically adding your own proxy group to new workspaces when you create them
• Fixed a bug causing data to be uploaded and overwritten numerous times while attempting to translate arrays

0.15.11 (Beta)

New Features:

• When arrays are present in entity data, lapdog.WorkspaceManagers attempt to silently translate to the appropriate FireCloud format.
• Added Terra upgrade banner to the UI. Use it to opt into a new Terra-style UI

Other Changes:

• Updated UI's Jquery version to 3.4.0
• Improved error handling in all cloud endpoints. This change is not critical so it will not trigger a patch. Newly created/patched Engines will receive this change.

0.15.10 (Beta)

Bug Fixes:

• Fixed error message not being displayed when Firecloud is completely offline
• Fixed UI not being able to start jobs or validate job inputs
• Fixed a crash caused by outdated protobuf

Other Changes:

• Slider CSS now works in multiple browsers

0.15.9 (Beta)

New Features:

• Added pagination to UI when listing submissions and workflows

Bug Fixes:

• Fixed a bug which would sometimes display submissions of the wrong workspace in the UI

Other Changes:

• Improved pagination of data table
• Improved error handling of resolution setup
  • Updated resolve global endpoint to v2 (no patch necessary)
• Renamed lapdog.gateway.generate_core_key to __generate_core_key
  • This change reflects the fact that this function should not be called by end-users

0.15.8 (Beta)

New Features:

• Added syntax highlighting when viewing WDLs in the UI
  • The first time you view a configuration in the UI after updating and after clearing your lapdog cache, the configuration will be slow to load while lapdog downloads WomTool

Bug Fixes:

• Fixed the offline evaluation schema returning unexpected results when attributes are not defined for one or more entities

Other Changes:

• lapdog.WorkspaceManager.get_config now supports multiple argument syntaxes
  • Check the docstring for details, but essentially, if you have anything that could be used to identify a method configuration, it will try and take it
• lapdog.WorkspaceManager.get_adapter now accepts global submission ids, forwarding them to the proper WorkspaceManager if necessary
• lapdog.WorkspaceManager.execute now attempts robust input checking while preparing submission. Missing required parameters or invalid array parameters will now raise an exception before requesting to start the submission

0.15.7 (Beta)

Bug Fixes:

• Fixed bold text not appearing on black background terminals

0.15.6 (Beta)

New Features:

• Added a target_set argument to lapdog.WorkspaceManager.update_participant_entities
  • Allows restricting the participant entities update to a specific entity set

Other Changes:

• Fixed dependency pins

0.15.5 (Beta)

Bug Fixes:

• Fixed an issue preventing lapdog from launching due to a dependency version conflict

0.15.4 (Beta)

New Features:

• lapdog.WorkspaceManagers will attempt to connect with a running lapdog UI (if present) to initialize the operator cache with data from the UI's cache of this workspace
• Added autocomplete to config inputs when editing a method configuration in the UI

Bug Fixes:

• Fixed not being able to upload new method configurations if the version was inferred from "latest"
• Fixed being unable to submit jobs or check quotas if a regions file was not defined
• Fixed a bug in the patching process which prevented patches to projects without a regions file

Other Changes:

• lapdog.WorkspaceManager.build_retry_set now handles FireCloud submissions
• Synchronized methods of lapdog.Operator now have the proper docstrings
• Updated dependencies

Patch Contents

• Updated quotas endpoint to v3
• Updated submit endpoint to v5

0.15.3 (Beta)

New Features:

• Added autocomplete for the Entity field in the UI when running a new job

Bug Fixes:

• lapdog.gateway.quota_usage now returns quota usage from all enabled compute regions, not just us-central1

Other Changes:

• lapdog.prune_cache now prints the size of data removed and kept, and returns the size of data removed

Patch Contents

• Updated quotas endpoint to v2 to support the above bugfix

0.15.2 (Beta)

New Features:

• Added lapdog.copyblob and lapdog.moveblob to copy and move blobs

Bug Fixes:

• Fixed a bug in the CLI preventing new workspaces from being created using lapdog workspace
• Fixed a bug in offline expression evaluation which prevented some complex expressions from being parsed

Other Changes:

• Cleaned the error messages displayed in lapdog doctor
• lapdog.Gateway now has a better string representation

0.15.1 (Beta)

New Features:

• Added lapdog.provenance to provide provenance of provided data

Bug Fixes:

• lapdog.Gateway.compute_regions now silently handles permission errors by returning the default compute region (us-central1)
• Fixed a bug which prevented users from re-selecting the default compute region in the UI after selecting another one
• Fixed a bug which allowed some protected files to be deleted by lapdog.WorkspaceManager.mop()

0.15.0 (Beta)

New Features:

• Users can now choose a custom compute region when submitting jobs
  • Administrators can change the list of allowed regions. Read more
  • Added dropdown menu to UI to select the compute region for a job

Other Changes:

• Removed the zones argument to lapdog.WorkspaceManager.execute in favor of regions argument to set compute region for job

Patch Contents

• Updated submit endpoint to v4 to support customizable compute regions
• Updated cromwell tag to v0.15.0

0.14.2 (Beta)

New Features:

• Added lapdog doctor command to diagnose issues with lapdog

Other Changes:

• Resubmitting a job through the UI now retains the same network configuration as the original job
• Interrupting lapdog.WorkspaceManager.mop() with Ctrl+C will abort the process and return the results so far

0.14.1 (Beta)

Bug Fixes:

• Fixed the cost estimate in the UI displaying the wrong cost for the default VM size

Other Changes:

• lapdog.WorkspaceManager.gateway is no longer set to None if the namespace has no resolution.
  • The attribute will be a full lapdog.Gateway which behaves as expected

0.14.0 (Beta)

New Features:

• User can now configure if submissions run with or without an externally routable IP address.
  • Without an IP (default for UI only) the instance cannot reach the internet (except for Google)

Bug Fixes:

• Fixed an issue with new submissions not caching properly

Other Changes:

• Reduced the number of gcloud queries when patching a namespace

Patch Contents

• Updated submit to v3 to reflect the private IP change
• Updated cromwell tag to v0.14.0
• Update VPC configuration to meet requirements for running jobs without externally routable IP address

0.13.6 (Beta)

New Features:

• Added lapdog.prune_cache() to reduce offline cache size by removing entries which have not been accessed in the last 30 days
• Added input configuration data to adapters:
  • lapdog.adapters.SubmissionAdapter.config : (Property) A pandas DataFrame representing the submission's input configuration
  • lapdog.adapters.SubmissionAdapter.input_mapping: (Property) A dictionary mapping workflow output keys to workflow inputs from the submission configuration
    • This attribute may raise a FileNotFoundError. If so, the submission configuration could not be found
  • lapdog.adapters.WorkflowAdapter.inputs: (Property) A dictionary of input names to values representing the inputs to this workflow
    • This attribute may raise a KeyError. If so, try updating the parent lapdog.adapters.SubmissionAdapter
• Lapdog UI now displays workflow inputs when viewing a workflow, if the input mapping was available

Other Changes:

• Updated Python and NodeJS dependencies for Python3.7
• Improved submission caching so that submissions started locally can be immediately cached
• Prevented anonymous access of resolution objects

Patch Contents

• Added an additional component to resolution patching. This fixes an issue preventing buckets from authenticating in old namespaces

0.13.5 (Beta)

Other Changes:

• Improved performance of lapdog.WorkspaceManager.mop()
• Added a status bar for lapdog.WorkspaceManager.update_participant_entities()

0.13.4 (Beta)

New Features:

• Added lapdog.WorkspaceManager.mop() method to remove unreferenced data from workspace bucket
• Added lapdog.WorkspaceManager.acl and lapdog.WorkspaceManager.update_acl() to get and set workspace ACL
• Added lapdog.adapters.Call.read_log() to read stderr, stdout, and cromwell logs

Other Changes:

• lapdog.WorkspaceManager.create_submission now runs a preflight to better handle input parameters
• "Data" header on the Workspace homepage in the UI now links to FireCloud
• Offline lapdog.operations.Operators will now synchronize to FireCloud every minute, but remain offline regardless of the result

0.13.3 (Beta)

Other Changes:

• Switched Lapdog Namespace Resolution system so as not to take advantage of FireCloud
• Lapdog API CORS policy now only allows the UI

Patch Contents

• Switched to newer namespace resolution method

0.13.2 (Beta)

Bug Fixes:

• Fixed a NameError when loading a Gateway that does not exist

0.13.1 (Beta)

Other Changes:

• Removed the 1 month lifetime limit on offline cache entries
• Hid Lapdog resolution projects from UI workspace list

0.13.0 (Beta)

Bug Fixes:

• Fixed a bug that could allow malicious users to impersonate a Lapdog Engine

Patch Contents

• Updated submit and register to v2 to reflect the bug fix above
• Redacted alpha, beta of all endpoints, as well as v1 of submit and register

0.12.5 (Beta)

Bug Fixes:

• Fixed a fatal issue in lapdog initialize-project
• Pinned firecloud>=0.16.9

0.12.4 (Beta)

Bug Fixes:

• Fixed an issue preventing lapdog.operations from patching firecloud.api.__SESSION in some installations

0.12.3 (Beta)

Bug Fixes:

• Resolved a bug in lapdog initialize-project which prevented billing accounts from linking properly
• Resolved a bug in lapdog.Operator which occasionally caused a TypeError when interacting with the FireCloud API

New Features:

• Added a permissions check to lapdog initialize-project to halt the process before any changes are made if the user does not have sufficient permissions to the provided billing account

0.12.2 (Beta)

Bug Fixes:

• Resolved a bug in the register endpoint which prevented the Lapdog proxy group from being created

0.12.1 (Beta)

Bug Fixes:

• Resolved a bug in the UI controllers which prevented automatic gateway registration
• Resolved a bug in the cloud utilities which prevented endpoints from querying the list of available cryptographic keys
• Resolved a bug in setup.py which prevented the lapdog.cloud module from being distributed

Patch Contents

• Updated role definitions for Core_account and Functions_account

0.12.0 (Beta)

Bug Fixes:

• Fixed a bug preventing Lapdog from recognizing Engines as initialized
• Fixed a bug preventing some Google Cloud timestamps from being parsed

New Features:

• Added the lapdog apply-patch function
• The operations cache now uses a timeout when reading from FireCloud
  • 5s timeout for data which is already present in the cache
  • 30s timeout for data which is not cached
• Parallelized lapdog.WorkspaceManager.update_participant_entities
• Listing submissions now falls back on the slower google-cloud-storage backend if gsutil is not visible on the PATH
• Submission data can be updated by calling lapdog.SubmissionAdapter.update_data()
• Added docstrings to all classes and methods which make up the primary lapdog interface
• lapdog.SubmissionAdapter.cost() now also reports the portion of the cost which is due to the Cromwell server

Patch Contents

• All endpoints set to version v1. Serial versioning will be used from now on
• Updated the Cromwell image tag to v0.12.0

0.11.5 (Beta)

Bug Fixes:

• Prevented lapdog.WorkspaceManager from re-synchronizing the workspace after executing a job, if the workspace was previously offline
• Fixed an error that was preventing Cromwell from retying queries if a previous query timed out

New Features:

• Lapdog Cloud Endpoints now use the latest cryptographic key in the project, instead of hard coding the 1st
• The Cromwell driver now recognizes when Cromwell crashes and adds helpful error messages
• Added a notice on the UI homepage when the local lapdog version is out of date

Other Changes:

• Reorganized lapdog.cloud code into a module

0.11.4 (Beta)

New Features:

• Added lapdog.WorkspaceManager.build_retry_set to automatically build an entity set of failed entities from a submission
• All controllers for the Lapdog UI now log their runtime in the console

Other Changes:

• Improved error messages displayed in UI when submitting a new job fails

0.11.3 (Beta)

Other Changes:

• lapdog.WorkspaceManager.execute now raises a ValueError if it expects that input metadata will exceed the PAPIv2 size limit

0.11.2 (Beta)

Bug Fixes:

• lapdog initialize-project can now be safely rerun if it fails

0.11.1 (Beta)

Bug Fixes:

• lapdog initialize-project now enables required billing apis before linking billing accounts
• Removed invalid permissions from IAM Role definitions

0.11.0 (Beta)

Bug Fixes:

• Fixed an issue with lapdog.SubmissionAdapter not recognizing some workflow events
• Fixed an issue with how some input metadata was unpacked inside Cromwell
• Reduced strain on Cromwell Server API by using a limited connection pool

Other Changes:

• Improved how lapdog.SubmissionAdapter estimates cost when the submission is still live

0.10.2 (Beta)

Bug Fixes:

• Fixed lapdog.SubmissionAdapter not recognizing extended memory machines as valid
• Fixed not being able to start Cromwell servers with large amounts of memory

New Features:

• Added quotas endpoint to Lapdog Engine
• Lapdog UI automatically registers user with Lapdog Engine when visiting workspace
• lapdog.WorkspaceManager now automatically adds proxy account to workspaces when creating

Other Changes:

• Lapdog UI now reports number of pending offline operations
• Updated IAM Role definitions

0.10.1 (Beta)

Bug Fixes:

• Fixed an issue which prevented users besides the owner of an Engine from querying genomics operations
• Reduced the frequency of FireCloud API errors during registration

New Features:

• Enabled automated project initialization

0.10.0 (Beta)

Lapdog Engine

This version overhauled the Lapdog cloud backend. All interactions with cloud resources (starting, aborting, and tracking jobs) is handled through a "Gateway" object which connects a local Lapdog client with cloud resources ("Engine"). Each Lapdog Engine is responsible for a single FireCloud namespace. Currently Engines must be initialized manually, but in future, the Gateway will be capable of running one-time setup for Lapdog Engines.

Bug Fixes:

• Fixed runtime configuration not being passed through Lapdog Gateway
• Fixed lapdog.cloud.update_iam_policy using wrong session object

New Features:

• Bark! Bark!

Other Changes:

• Improved UI feedback for Lapdog Engine state
• Lapdog Cloud register endpoint can now be re-run if it fails partway
• Removed Lapdog Gateway warning from UI
• Lapdog UI Workspace cache is now a switch instead of a button with multiple states
• Updated ui dependencies (Please run lapdog ui --install again to update)

---

Versions of Lapdog prior to 0.10.0 did not use a Gateway or Engine. These versions utilized your personal Google Cloud account and project to run jobs. These versions are no longer supported, and changes will be recorded very briefly

0.9.9 (Deprecated, Alpha)

Responded to a change in the FireCloud API

0.9.8 (Deprecated, Alpha)

Added disk usage to cost estimation

0.9.7 (Deprecated, Alpha)

Improved cost estimation

0.9.6 (Deprecated, Alpha)

Added Call runtime calculation

0.9.5 (Deprecated, Alpha)

Fixed disk cache running out of available filenames

0.9.4 (Deprecated, Alpha)

SubmissionAdapters are now thread-safe

0.9.3 (Deprecated, Alpha)

Fixed Cost estimation in the UI

0.9.2 (Deprecated, Alpha)

Improved submission page UI preformance

0.9.1 (Deprecated, Alpha)

Improved cost estimation

0.9.0 (Deprecated, Alpha)

Improved Cromwell's ability to handle large submissions

0.8.10 and earlier

Changes prior to 0.9.0 are not tracked. These versions, as well as all versions prior to 0.10.0, are deprecated. If you need to access change history, you can look at commits prior to c6b1e12