diff --git a/src/components/shell_variable_manifest.md b/src/components/shell_variable_manifest.md index 537ae019..f0ba6af4 100644 --- a/src/components/shell_variable_manifest.md +++ b/src/components/shell_variable_manifest.md @@ -6,217 +6,217 @@ Note: This does not include variables defined in python scripts. | ShellVariable | SourceScripts | DefinedIn | DefinedInFunction | UsedInFunction | |:------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------|:---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | aggregation_file | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['reduce_dimension'] | ['create_statevector', 'reduce_dimension'] | -| AIRS | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | +| AIRS | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | | archive_sv | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['reduce_dimension'] | ['create_statevector', 'reduce_dimension'] | | bc_perturb | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['generate_BC_perturb_values'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | -| BCdryrun | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| BCpath | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| BCdryrun | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| BCpath | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | | bcThreshold | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian', 'generate_BC_perturb_values'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | -| BCversion | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| blendedDir | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| BlendedTROPOMI | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior'] | +| BCversion | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| blendedDir | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| BlendedTROPOMI | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior'] | | BufferDeg | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| buildJacobian | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | +| buildJacobian | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | c | ['src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/run_boundary_conditions.sh'] | [] | [] | | channels | ['envs/Harvard-Cannon/imi_env.yml'] | ['envs/Harvard-Cannon/imi_env.yml'] | [] | [] | | ClusteringMethod | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | cmd | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | -| condaEnv | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | CondaEnv | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| condaEnv | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | CondaFile | ['config.yml', 'run_imi.sh'] | ['config.yml'] | [] | [] | | config_path | ['src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['create_statevector', 'reduce_dimension', 'run_notebooks', 'run_preview'] | ['create_statevector', 'reduce_dimension', 'setup_inversion', 'run_inversion', 'run_notebooks', 'run_preview'] | | configFile | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| ConfigFile | ['run_imi.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/preview_component/preview.sh', 'src/utilities/cleanup_script.sh'] | ['run_imi.sh', 'src/utilities/cleanup_script.sh'] | [] | ['create_statevector', 'reduce_dimension', 'setup_inversion', 'run_notebooks', 'setup_kf', 'run_period', 'run_preview'] | +| ConfigFile | ['run_imi.sh', 'src/utilities/cleanup_script.sh', 'src/components/kalman_component/kalman.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['run_imi.sh', 'src/utilities/cleanup_script.sh'] | [] | ['setup_kf', 'run_period', 'create_statevector', 'reduce_dimension', 'setup_inversion', 'run_notebooks', 'run_preview'] | | ConfigPath | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period'] | | constYr | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | copydir | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period'] | | corrupt | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | ['report'] | ['download_aws_files', 'report'] | -| CreateAutomaticRectilinearStateVectorFile | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| CreateAutomaticRectilinearStateVectorFile | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | | cwd | ['src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/run_boundary_conditions.sh'] | [] | [] | -| DataPath | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_template'] | +| DataPath | ['config.yml', 'src/components/statevector_component/statevector.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_template'] | | DataPathTROPOMI | ['run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | date_str | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | -| debug | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| debug | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | dependencies | ['envs/Harvard-Cannon/imi_env.yml'] | ['envs/Harvard-Cannon/imi_env.yml'] | [] | [] | | DEST | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | diff | ['src/utilities/common.sh'] | ['src/utilities/common.sh'] | ['calculate_geoschem_domain'] | ['print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain'] | | dir | ['src/utilities/cleanup_script.sh'] | [] | [] | [] | | DOFSThreshold | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| DoInversion | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | -| DoJacobian | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | -| DoPosterior | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | -| DoPreview | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| DoSpinup | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_jacobian', 'setup_imi'] | +| DoInversion | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | +| DoJacobian | ['config.yml', 'run_imi.sh', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | +| DoPosterior | ['config.yml', 'run_imi.sh', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_kf'] | +| DoPreview | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| DoSpinup | ['config.yml', 'run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_imi', 'setup_jacobian'] | | DownloadGlobalMet | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | -| DynamicKFClustering | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/kalman_component/kalman.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['reduce_dimension', 'run_period'] | +| DynamicKFClustering | ['config.yml', 'src/components/kalman_component/kalman.sh', 'src/components/statevector_component/statevector.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_period', 'reduce_dimension'] | | element | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['generate_BC_perturb_values'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | end_time | ['run_imi.sh'] | ['run_imi.sh'] | [] | [] | -| endDate | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| EndDate | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'setup_spinup', 'run_jacobian', 'setup_kf', 'setup_imi', 'run_preview', 'setup_template'] | -| EndDate_i | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/kalman_component/kalman.sh'] | ['run_posterior', 'run_period'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'run_inversion', 'setup_kf', 'run_kf', 'run_period'] | +| EndDate | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'run_posterior', 'setup_imi', 'setup_spinup', 'setup_template', 'run_jacobian', 'run_preview'] | +| endDate | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| EndDate_i | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh'] | ['run_period', 'run_posterior'] | ['setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'run_inversion'] | | EndMonth | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | ErrorBCs | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | ErrorOH | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | FetchTROPOMI | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| file | ['src/utilities/crop_met.sh', 'src/utilities/common.sh', 'src/utilities/find_corrupt_files.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/utilities/common.sh', 'src/inversion_scripts/run_inversion.sh'] | ['imi_failed', 'send_error'] | ['print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain', 'send_error'] | | FILE | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | [] | [] | +| file | ['src/inversion_scripts/run_inversion.sh', 'src/utilities/crop_met.sh', 'src/utilities/common.sh', 'src/utilities/find_corrupt_files.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/utilities/common.sh'] | ['send_error', 'imi_failed'] | ['send_error', 'print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain'] | | FILE_LIST | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | FirstPeriod | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period'] | -| FirstSimSwitch | ['src/components/inversion_component/inversion.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/inversion_component/inversion.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_inversion'] | ['setup_inversion', 'run_inversion', 'run_notebooks', 'send_error'] | +| FirstSimSwitch | ['src/inversion_scripts/run_inversion.sh', 'src/components/inversion_component/inversion.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/inversion_component/inversion.sh'] | ['run_inversion'] | ['send_error', 'setup_inversion', 'run_inversion', 'run_notebooks'] | | ForcedNativeResolutionElements | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | fOut | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | fs | ['src/utilities/parse_yaml.sh'] | [] | [] | ['parse_yaml'] | | fullBCpath | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations', 'setup_template'] | -| Gamma | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| Gamma | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | GCClassicPath | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations', 'setup_template'] | -| GCDir | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | +| GCDir | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | gcEndDate | ['src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/run_boundary_conditions.sh'] | [] | [] | -| GCsourcepth | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | +| GCsourcepth | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | gcStartDate | ['src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/run_boundary_conditions.sh'] | [] | [] | -| geosChemDataPath | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| geosChemDataPath | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| geosChemEnv | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | GEOSChemEnv | ['run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| geosChemEnv | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | GlobalDir | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | -| GOSAT | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | +| GOSAT | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | | GriddedPosterior | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | gridDir | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | gridFile | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | HemcoDiagFile | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['create_statevector'] | ['create_statevector', 'reduce_dimension'] | | HOME | ['src/components/template_component/template.sh'] | [] | [] | ['setup_template'] | -| HourlyCH4 | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_template'] | +| HourlyCH4 | ['config.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_spinup', 'setup_template', 'setup_jacobian'] | | indent | ['src/utilities/parse_yaml.sh'] | ['src/utilities/parse_yaml.sh'] | ['parse_yaml'] | ['parse_yaml'] | | InPath | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | inv_result_path | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| inversion_end | ['src/components/inversion_component/inversion.sh', 'src/utilities/common.sh'] | ['src/components/inversion_component/inversion.sh'] | ['run_inversion'] | ['setup_inversion', 'run_inversion', 'run_notebooks', 'print_stats'] | +| inversion_end | ['src/utilities/common.sh', 'src/components/inversion_component/inversion.sh'] | ['src/components/inversion_component/inversion.sh'] | ['run_inversion'] | ['print_stats', 'setup_inversion', 'run_inversion', 'run_notebooks'] | | inversion_sensi_dir | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | -| inversion_start | ['src/components/inversion_component/inversion.sh', 'src/utilities/common.sh'] | ['src/components/inversion_component/inversion.sh'] | ['run_inversion'] | ['setup_inversion', 'run_inversion', 'run_notebooks', 'print_stats'] | +| inversion_start | ['src/utilities/common.sh', 'src/components/inversion_component/inversion.sh'] | ['src/components/inversion_component/inversion.sh'] | ['run_inversion'] | ['print_stats', 'setup_inversion', 'run_inversion', 'run_notebooks'] | | InversionDir | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period'] | -| InversionPath | ['run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh', 'src/utilities/common.sh'] | ['run_imi.sh'] | [] | ['run_posterior', 'setup_jacobian', 'run_jacobian', 'create_statevector', 'reduce_dimension', 'setup_inversion', 'run_notebooks', 'setup_kf', 'run_period', 'setup_imi', 'run_preview', 'setup_template', 'imi_failed'] | +| InversionPath | ['run_imi.sh', 'src/utilities/common.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['run_imi.sh'] | [] | ['imi_failed', 'setup_kf', 'run_period', 'run_posterior', 'create_statevector', 'reduce_dimension', 'setup_imi', 'setup_inversion', 'run_notebooks', 'setup_template', 'setup_jacobian', 'run_jacobian', 'run_preview'] | | invPath | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | InvPeriodLength | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | -| isAWS | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | -| isPost | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | -| isRegional | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | +| isAWS | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | +| isPost | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | +| isRegional | ['config.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | | ithDates | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period'] | | ithLine | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period'] | | jacobian_dir | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | jacobian_dirs_array | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | -| jacobian_end | ['src/components/jacobian_component/jacobian.sh', 'src/utilities/common.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'print_stats'] | +| jacobian_end | ['src/utilities/common.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['print_stats', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | jacobian_sf | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| jacobian_start | ['src/components/jacobian_component/jacobian.sh', 'src/utilities/common.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'print_stats'] | -| JacobianCPUs | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| jacobian_start | ['src/utilities/common.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['print_stats', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | +| JacobianCPUs | ['config.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | JacobianDir | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| JacobianMemory | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| JacobianRunsDir | ['src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_kf'] | ['run_jacobian', 'setup_kf', 'run_kf', 'run_period', 'send_error'] | -| KalmanMode | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'setup_spinup', 'run_jacobian', 'reduce_dimension', 'setup_inversion', 'run_inversion', 'run_notebooks', 'run_preview', 'setup_template'] | +| JacobianMemory | ['config.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| JacobianRunsDir | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['send_error', 'setup_kf', 'run_kf', 'run_period', 'run_jacobian'] | +| KalmanMode | ['config.yml', 'run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'reduce_dimension', 'setup_spinup', 'setup_inversion', 'run_inversion', 'run_notebooks', 'setup_template', 'run_jacobian', 'run_preview'] | | kf_inversion_dirs | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | LandCoverFile | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['create_statevector'] | ['create_statevector', 'reduce_dimension'] | | LandCoverFileExtension | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | LandThreshold | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | LastConcFile | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | -| LatMax | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | [] | [] | -| LatMaxInvDomain | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_inversion', 'setup_imi', 'activate_observations', 'setup_template', 'send_error'] | -| LatMin | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | [] | [] | -| LatMinInvDomain | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_inversion', 'setup_imi', 'activate_observations', 'setup_template', 'send_error'] | +| LatMax | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| LatMaxInvDomain | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh'] | ['run_posterior', 'setup_imi'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_inversion', 'setup_template'] | +| LatMin | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| LatMinInvDomain | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh'] | ['run_posterior', 'setup_imi'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_inversion', 'setup_template'] | | Lats | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | -| LINENO | ['run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'src/inversion_scripts/run_inversion.sh'] | [] | [] | ['run_posterior', 'run_spinup', 'run_jacobian', 'run_inversion', 'run_preview'] | -| LonMax | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | [] | [] | -| LonMaxInvDomain | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_inversion', 'setup_imi', 'activate_observations', 'setup_template', 'send_error'] | -| LonMin | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | [] | [] | -| LonMinInvDomain | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_inversion', 'setup_imi', 'activate_observations', 'setup_template', 'send_error'] | +| LINENO | ['run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | [] | [] | ['run_posterior', 'run_spinup', 'run_inversion', 'run_jacobian', 'run_preview'] | +| LonMax | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| LonMaxInvDomain | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh'] | ['run_posterior', 'setup_imi'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_inversion', 'setup_template'] | +| LonMin | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| LonMinInvDomain | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh'] | ['run_posterior', 'setup_imi'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_inversion', 'setup_template'] | | Lons | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | -| MaxSimultaneousRuns | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| MaxSimultaneousRuns | ['config.yml', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| Met | ['config.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | | MET | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | -| Met | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | | metDir | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | metNum | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | | mm | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | Month | ['src/utilities/crop_met.sh'] | [] | [] | [] | -| name | ['envs/Harvard-Cannon/imi_env.yml', 'src/components/jacobian_component/jacobian.sh'] | ['envs/Harvard-Cannon/imi_env.yml', 'src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | +| name | ['src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/imi_env.yml'] | ['src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/imi_env.yml'] | ['setup_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | native | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | | native_state_vector_path | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['reduce_dimension'] | ['create_statevector', 'reduce_dimension'] | -| nBufferClusters | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| nElements | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'reduce_dimension', 'setup_kf', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_jacobian', 'create_statevector', 'reduce_dimension', 'setup_inversion', 'setup_kf', 'run_kf', 'run_period', 'setup_imi', 'activate_observations', 'send_error'] | +| nBufferClusters | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| nElements | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['setup_kf', 'run_posterior', 'reduce_dimension', 'setup_imi'] | ['send_error', 'setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'create_statevector', 'reduce_dimension', 'setup_imi', 'activate_observations', 'setup_inversion', 'setup_jacobian'] | | NEW | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['activate_observations', 'setup_template'] | ['setup_imi', 'activate_observations', 'setup_template'] | | nPeriods | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period'] | -| NudgeFactor | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_period'] | +| NudgeFactor | ['config.yml', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_period'] | | NumberOfElements | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| ObsError | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| ObsError | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | OffshoreEmisThreshold | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | OHthreshold | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | OLD | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['activate_observations', 'setup_template'] | ['setup_imi', 'activate_observations', 'setup_template'] | -| OptimizeBCs | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'setup_jacobian', 'reduce_dimension', 'setup_kf', 'setup_imi'] | -| OptimizeOH | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'generate_optimized_BC_values', 'setup_jacobian', 'reduce_dimension', 'setup_kf', 'setup_imi'] | -| OutputPath | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/utilities/cleanup_script.sh', 'src/utilities/common.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/cleanup_script.sh', 'src/inversion_scripts/run_inversion.sh'] | [] | ['setup_inversion', 'setup_imi', 'imi_failed', 'send_error'] | -| partition | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| period_i | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh'] | [] | [] | ['run_posterior', 'run_jacobian', 'reduce_dimension', 'run_inversion', 'run_notebooks', 'run_period'] | +| OptimizeBCs | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'run_posterior', 'reduce_dimension', 'setup_imi', 'setup_jacobian'] | +| OptimizeOH | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'run_posterior', 'generate_optimized_BC_values', 'reduce_dimension', 'setup_imi', 'setup_jacobian'] | +| OutputPath | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/utilities/common.sh', 'src/utilities/cleanup_script.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/utilities/cleanup_script.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['send_error', 'imi_failed', 'setup_imi', 'setup_inversion'] | +| partition | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| period_i | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh'] | [] | [] | ['run_period', 'run_posterior', 'reduce_dimension', 'run_inversion', 'run_notebooks', 'run_jacobian'] | | PeriodsFile | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period'] | | pert_index | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['generate_BC_perturb_values'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | pertBCs | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | pertOH | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | PerturbBCValues | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh'] | ['run_posterior', 'setup_jacobian'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | PerturbOHValue | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| PerturbValue | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | -| PerturbValueBCs | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | -| PerturbValueOH | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | -| PLANEFLIGHT | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | +| PerturbValue | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| PerturbValueBCs | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| PerturbValueOH | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| PLANEFLIGHT | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | | PointSourceDatasets | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| posterior_end | ['src/components/posterior_component/posterior.sh', 'src/utilities/common.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'print_stats'] | -| posterior_start | ['src/components/posterior_component/posterior.sh', 'src/utilities/common.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'print_stats'] | -| PosteriorDryRun | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior'] | +| posterior_end | ['src/utilities/common.sh', 'src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['print_stats', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | +| posterior_start | ['src/utilities/common.sh', 'src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['print_stats', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | +| PosteriorDryRun | ['config.yml', 'src/components/posterior_component/posterior.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior'] | | PosteriorName | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['setup_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| PosteriorRunDir | ['src/components/posterior_component/posterior.sh', 'src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior', 'run_kf'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_kf', 'run_kf', 'run_period', 'send_error'] | +| PosteriorRunDir | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh'] | ['run_kf', 'run_posterior'] | ['send_error', 'setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | posteriorSF | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| PrecomputedJacobian | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_jacobian'] | +| PrecomputedJacobian | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_jacobian'] | | precomputedJacobianCache | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | prefix | ['src/utilities/parse_yaml.sh'] | [] | [] | ['parse_yaml'] | -| PrevDir | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | +| PrevDir | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['send_error', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | preview_dir | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['reduce_dimension', 'run_preview'] | ['create_statevector', 'reduce_dimension', 'run_preview'] | | preview_end | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | | preview_file | ['src/components/preview_component/preview.sh'] | ['src/components/preview_component/preview.sh'] | ['run_preview'] | ['run_preview'] | | preview_start | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | -| PreviewDryRun | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_preview'] | +| PreviewDryRun | ['config.yml', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_preview'] | | PreviewEnd | ['src/components/preview_component/preview.sh'] | ['src/components/preview_component/preview.sh'] | ['run_preview'] | ['run_preview'] | | PreviewName | ['src/components/preview_component/preview.sh'] | ['src/components/preview_component/preview.sh'] | ['run_preview'] | ['run_preview'] | -| PriorError | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| PriorErrorBCs | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| PriorErrorOH | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| PriorRunDir | ['src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period', 'send_error'] | +| PriorError | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| PriorErrorBCs | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| PriorErrorOH | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| PriorRunDir | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['send_error', 'setup_kf', 'run_kf', 'run_period'] | | ProcessConstantFields | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | -| ProductionDryRun | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | +| ProductionDryRun | ['config.yml', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | | PWD | ['src/utilities/cleanup_script.sh'] | [] | [] | [] | -| python_args | ['src/components/statevector_component/statevector.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/statevector_component/statevector.sh', 'src/inversion_scripts/run_inversion.sh'] | ['reduce_dimension'] | ['create_statevector', 'reduce_dimension', 'send_error'] | +| python_args | ['src/inversion_scripts/run_inversion.sh', 'src/components/statevector_component/statevector.sh'] | ['src/inversion_scripts/run_inversion.sh', 'src/components/statevector_component/statevector.sh'] | ['reduce_dimension'] | ['send_error', 'create_statevector', 'reduce_dimension'] | | PYTHONPATH | ['run_imi.sh', 'src/components/kalman_component/kalman.sh'] | [] | [] | ['run_period'] | -| ReDoJacobian | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'src/components/jacobian_component/jacobian.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml'] | [] | ['run_jacobian'] | -| ReducedDimensionStateVector | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_period', 'setup_imi'] | +| ReDoJacobian | ['config.yml', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml'] | [] | ['run_jacobian'] | +| ReducedDimensionStateVector | ['config.yml', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_period', 'setup_imi'] | | ReferenceRunDir | ['src/components/jacobian_component/jacobian.sh'] | [] | [] | ['run_jacobian'] | | RegionalDir | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | -| RegionID | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/utilities/crop_met.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/crop_met.sh'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | +| RegionID | ['config.yml', 'src/utilities/crop_met.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/crop_met.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template'] | | RemoveGlobalMet | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | -| RequestedTime | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'run_spinup', 'reduce_dimension', 'run_inversion', 'run_preview'] | -| Res | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/inversion_scripts/run_inversion.sh'] | [] | ['run_posterior', 'setup_inversion', 'setup_imi', 'setup_template', 'send_error'] | +| RequestedTime | ['config.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'reduce_dimension', 'run_spinup', 'run_inversion', 'run_preview'] | +| Res | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['send_error', 'run_posterior', 'setup_imi', 'setup_inversion', 'setup_template'] | | RES | ['src/components/template_component/template.sh'] | [] | [] | ['setup_template'] | | RESOLUTION | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | response | ['src/utilities/cleanup_script.sh'] | [] | [] | [] | -| RestartDownload | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| RestartFile | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh'] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_spinup', 'run_spinup', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'setup_imi', 'activate_observations'] | +| RestartDownload | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| RestartFile | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh'] | ['setup_posterior', 'setup_imi', 'setup_spinup', 'setup_jacobian'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_spinup', 'run_spinup', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | restartFileDate | ['src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/run_boundary_conditions.sh'] | [] | [] | | RestartFileFromSpinup | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh'] | ['setup_posterior', 'setup_jacobian'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | -| restartFilePath | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| RestartFilePrefix | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi'] | +| restartFilePath | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| RestartFilePrefix | ['config.yml', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'setup_imi', 'setup_spinup', 'setup_jacobian'] | | RestartFilePreview | ['src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh'] | ['src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh'] | ['setup_imi', 'run_preview'] | ['setup_imi', 'activate_observations', 'run_preview'] | -| RestartFilePreviewPrefix | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi', 'run_preview'] | +| RestartFilePreviewPrefix | ['config.yml', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi', 'run_preview'] | | retVal | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | [] | [] | | rm_command | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | ROOT | ['src/components/template_component/template.sh'] | [] | [] | ['setup_template'] | | RunDir | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | RUNDIR | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh'] | [] | [] | -| runDir | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/write_BCs/run_boundary_conditions.sh'] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi', 'run_preview'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_spinup', 'run_spinup', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'setup_imi', 'activate_observations', 'run_preview', 'setup_template'] | -| RunDirs | ['run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh'] | ['run_imi.sh', 'src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'run_posterior', 'setup_spinup', 'run_spinup', 'setup_jacobian', 'run_jacobian', 'create_statevector', 'reduce_dimension', 'setup_inversion', 'run_inversion', 'run_notebooks', 'setup_kf', 'run_kf', 'run_period', 'setup_imi', 'activate_observations', 'run_preview', 'setup_template'] | +| runDir | ['src/write_BCs/run_boundary_conditions.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['src/write_BCs/run_boundary_conditions.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['setup_posterior', 'setup_imi', 'setup_spinup', 'setup_jacobian', 'run_preview'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_imi', 'activate_observations', 'setup_spinup', 'run_spinup', 'setup_template', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'run_preview'] | +| RunDirs | ['run_imi.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['run_imi.sh', 'src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'create_statevector', 'reduce_dimension', 'setup_imi', 'activate_observations', 'setup_spinup', 'run_spinup', 'setup_inversion', 'run_inversion', 'run_notebooks', 'setup_template', 'setup_jacobian', 'run_jacobian', 'run_preview'] | | RunFilesPath | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | -| RunName | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/utilities/cleanup_script.sh', 'src/utilities/common.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/utilities/cleanup_script.sh'] | [] | ['setup_posterior', 'run_posterior', 'setup_spinup', 'run_spinup', 'setup_jacobian', 'run_jacobian', 'setup_inversion', 'run_kf', 'run_period', 'setup_imi', 'run_preview', 'imi_failed'] | +| RunName | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/utilities/common.sh', 'src/utilities/cleanup_script.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/utilities/cleanup_script.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['imi_failed', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'setup_imi', 'setup_spinup', 'run_spinup', 'setup_inversion', 'setup_jacobian', 'run_jacobian', 'run_preview'] | | RunSetup | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| RunTemplate | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi', 'activate_observations', 'run_preview', 'setup_template'] | +| RunTemplate | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_imi', 'activate_observations', 'setup_spinup', 'setup_template', 'setup_jacobian', 'run_preview'] | | s | ['src/utilities/parse_yaml.sh'] | [] | [] | ['parse_yaml'] | | S3_BUCKET | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | s3_hd_path | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['create_statevector'] | ['create_statevector', 'reduce_dimension'] | @@ -224,54 +224,54 @@ Note: This does not include variables defined in python scripts. | S3_PATH | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | S3Upload | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | SafeMode | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| SchedulerPartition | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'run_spinup', 'reduce_dimension', 'run_inversion', 'run_preview'] | +| SchedulerPartition | ['config.yml', 'src/geoschem_run_scripts/submit_jacobian_simulations_array.sh', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'reduce_dimension', 'run_spinup', 'run_inversion', 'run_preview'] | | sensiCache | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | setup_end | ['run_imi.sh', 'src/utilities/common.sh'] | ['run_imi.sh'] | [] | ['print_stats'] | | setup_start | ['run_imi.sh', 'src/utilities/common.sh'] | ['run_imi.sh'] | [] | ['print_stats'] | -| SetupInversion | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| SetupJacobianRuns | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| SetupPosteriorRun | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| SetupSpinupRun | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | -| SetupTemplateRundir | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SetupInversion | ['config.yml', 'run_imi.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SetupJacobianRuns | ['config.yml', 'run_imi.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SetupPosteriorRun | ['config.yml', 'run_imi.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SetupSpinupRun | ['config.yml', 'run_imi.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SetupTemplateRundir | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | | ShapeFile | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | -| SimulationCPUs | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'run_spinup', 'reduce_dimension', 'run_inversion', 'run_preview'] | -| SimulationMemory | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/statevector_component/statevector.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'run_spinup', 'reduce_dimension', 'run_inversion', 'run_preview'] | +| SimulationCPUs | ['config.yml', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'reduce_dimension', 'run_spinup', 'run_inversion', 'run_preview'] | +| SimulationMemory | ['config.yml', 'src/components/posterior_component/posterior.sh', 'src/components/statevector_component/statevector.sh', 'src/components/spinup_component/spinup.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_posterior', 'reduce_dimension', 'run_spinup', 'run_inversion', 'run_preview'] | | SLURM_ARRAY_TASK_ID | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | [] | -| spinup_end | ['src/components/spinup_component/spinup.sh', 'src/utilities/common.sh'] | ['src/components/spinup_component/spinup.sh'] | ['run_spinup'] | ['setup_spinup', 'run_spinup', 'print_stats'] | -| spinup_start | ['src/components/spinup_component/spinup.sh', 'src/utilities/common.sh'] | ['src/components/spinup_component/spinup.sh'] | ['run_spinup'] | ['setup_spinup', 'run_spinup', 'print_stats'] | +| spinup_end | ['src/utilities/common.sh', 'src/components/spinup_component/spinup.sh'] | ['src/components/spinup_component/spinup.sh'] | ['run_spinup'] | ['print_stats', 'setup_spinup', 'run_spinup'] | +| spinup_start | ['src/utilities/common.sh', 'src/components/spinup_component/spinup.sh'] | ['src/components/spinup_component/spinup.sh'] | ['run_spinup'] | ['print_stats', 'setup_spinup', 'run_spinup'] | | SpinupDir | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| SpinupDryrun | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/spinup_component/spinup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_spinup'] | -| SpinupEnd | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi', 'activate_observations'] | -| SpinupMonths | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | +| SpinupDryrun | ['config.yml', 'src/components/spinup_component/spinup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_spinup'] | +| SpinupEnd | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_imi', 'activate_observations', 'setup_spinup', 'setup_jacobian'] | +| SpinupMonths | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_imi'] | | SpinupName | ['src/components/spinup_component/spinup.sh'] | ['src/components/spinup_component/spinup.sh'] | ['setup_spinup'] | ['setup_spinup', 'run_spinup'] | -| SpinupStart | ['src/components/spinup_component/spinup.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_spinup', 'setup_imi', 'activate_observations'] | +| SpinupStart | ['src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations', 'setup_spinup'] | | START | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | | start_time | ['run_imi.sh'] | ['run_imi.sh'] | [] | [] | -| startDate | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| StartDate | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh', 'src/components/template_component/template.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_posterior', 'run_posterior', 'setup_spinup', 'setup_jacobian', 'setup_kf', 'setup_imi', 'run_preview', 'setup_template'] | -| StartDate_i | ['src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/kalman_component/kalman.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/kalman_component/kalman.sh'] | ['run_posterior', 'run_period'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'run_inversion', 'setup_kf', 'run_kf', 'run_period'] | +| StartDate | ['config.yml', 'run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/template_component/template.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'setup_posterior', 'run_posterior', 'setup_imi', 'setup_spinup', 'setup_template', 'setup_jacobian', 'run_preview'] | +| startDate | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| StartDate_i | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh'] | ['run_period', 'run_posterior'] | ['setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'run_inversion'] | | StartMonth | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | state_vector_path | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['reduce_dimension', 'run_preview'] | ['create_statevector', 'reduce_dimension', 'run_preview'] | -| StateVectorFile | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['setup_kf'] | ['setup_kf', 'run_kf', 'run_period', 'setup_imi', 'send_error'] | +| StateVectorFile | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'src/inversion_scripts/run_inversion.sh', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['setup_kf'] | ['send_error', 'setup_kf', 'run_kf', 'run_period', 'setup_imi'] | | StateVectorFName | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['create_statevector'] | ['create_statevector', 'reduce_dimension'] | | stdout | ['run_imi.sh'] | ['run_imi.sh'] | [] | [] | | sv | ['src/utilities/common.sh'] | ['src/utilities/common.sh'] | ['calculate_geoschem_domain'] | ['print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain'] | -| TCCON | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | +| TCCON | ['config.yml', 'src/components/setup_component/setup.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | | tropomi_cache | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['reduce_dimension', 'run_preview'] | ['create_statevector', 'reduce_dimension', 'run_preview'] | -| tropomiCache | ['run_imi.sh', 'src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_imi.sh', 'src/inversion_scripts/run_inversion.sh'] | [] | ['run_posterior', 'send_error'] | -| tropomiDir | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| UpdateFreqDays | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf'] | -| UseBCsForRestart | ['src/components/posterior_component/posterior.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/preview_component/preview.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_spinup', 'setup_jacobian', 'setup_imi', 'activate_observations', 'run_preview'] | -| UseEmisSF | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_template'] | -| UseOHSF | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_template'] | -| UseSlurm | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['reduce_dimension', 'run_preview'] | +| tropomiCache | ['run_imi.sh', 'src/inversion_scripts/run_inversion.sh', 'src/components/posterior_component/posterior.sh'] | ['run_imi.sh', 'src/inversion_scripts/run_inversion.sh'] | [] | ['send_error', 'run_posterior'] | +| tropomiDir | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| UpdateFreqDays | ['config.yml', 'src/components/kalman_component/kalman.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf'] | +| UseBCsForRestart | ['src/components/posterior_component/posterior.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/preview_component/preview.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_posterior', 'setup_imi', 'activate_observations', 'setup_spinup', 'setup_jacobian', 'run_preview'] | +| UseEmisSF | ['config.yml', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_template'] | +| UseOHSF | ['config.yml', 'src/components/template_component/template.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_template'] | +| UseSlurm | ['config.yml', 'src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['reduce_dimension', 'run_preview'] | | vn | ['src/utilities/parse_yaml.sh'] | ['src/utilities/parse_yaml.sh'] | ['parse_yaml'] | ['parse_yaml'] | | w | ['src/utilities/parse_yaml.sh'] | [] | [] | ['parse_yaml'] | -| workDir | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| x | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'run_period'] | +| workDir | ['src/write_BCs/run_boundary_conditions.sh', 'src/write_BCs/config_boundary_conditions.yml'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | +| x | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['run_period', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | xhat | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['generate_optimized_BC_values', 'generate_optimized_OH_value'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| xstr | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/kalman_component/kalman.sh'] | ['setup_jacobian', 'run_period'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values', 'setup_kf', 'run_kf', 'run_period'] | +| xstr | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh'] | ['run_period', 'setup_jacobian'] | ['setup_kf', 'run_kf', 'run_period', 'setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | | xUSE | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'run_jacobian', 'generate_BC_perturb_values'] | -| YEAR | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | Year | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | +| YEAR | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | yyyymmdd | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | \ No newline at end of file