Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

172bp mosaic DEL at chr1:151220118-151220291 #3

Open
jzook opened this issue May 10, 2024 · 1 comment
Open

172bp mosaic DEL at chr1:151220118-151220291 #3

jzook opened this issue May 10, 2024 · 1 comment
Labels
DEL Deletion 50bp to 1Mbp

Comments

@jzook
Copy link
Collaborator

jzook commented May 10, 2024

Screenshot 2024-05-09 at 10 25 04 PM

Severus call, which looks correct
Chr: chr1
Position: 151220118-151220291
ID: severus_DEL361
Reference: N*
Alternate:
Qual: 60
Type: SYMBOLIC
Is Filtered Out: No

Alleles:
Alternate Alleles:
Allele Frequency: -1.0

Variant Attributes
PRECISE: true
STRANDS: +-
MAPQ: 60.0
PHASESETID: 150274906
SVTYPE: DEL
HP: 1
END: 151220291
SVLEN: 173

@jzook jzook added the DEL Deletion 50bp to 1Mbp label May 10, 2024
@jzook
Copy link
Collaborator Author

jzook commented May 10, 2024

Would need to look at single cell data to know what fraction of cells and whether it was in the same cells as the 1q del.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
DEL Deletion 50bp to 1Mbp
Projects
None yet
Development

No branches or pull requests

1 participant