- new functions: plot_means, plot_pvalues
- plot_means, plot_pvalues, plot_volcano, plot_methylation_path functions added to the QuickStart
- Added Online Manual
- Added Cheatsheet
- Updated Quick start
- more tests for expression and methylation (based on packages
methyAnalysis
andedgeR
) - adding a simple guide for the user -
QuickStart
- first unit tests for package
- more parameters in public functions
- new public function names (old -> new):
- test_diff -> calculate_test
- comparison table -> calculate_comparison_table
- map_to_gene -> aggregate_probes
- mehylation_path -> plot_methylation_path
- volcano_plot -> plot_volcano
- group_boxplot -> plot_diff_boxplot
- visual_volcano -> plot_volcanoes
- visual_gene -> plot_gene
- report_generate -> generate_report