Neurosift DANDI Examples

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Jeremy Magland edited this page Aug 2, 2023 · 22 revisions

LabeledEvents example

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/80d/c44/80dc4460-7652-4b88-97ce-69a7e8be5d60&tab=neurodata-item:/processing/behavior/RewardEventsLinearTrack|LabeledEvents

Here's one with synchronized views: https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/80d/c44/80dc4460-7652-4b88-97ce-69a7e8be5d60&tab=neurodata-items:neurodata-item:/processing/behavior/RewardEventsLinearTrack%7CLabeledEvents@neurodata-item:/processing/behavior/LinearMazePositionTracking/SpatialSeriesRaw%7CSpatialSeries@view:X/Y%7C/processing/behavior/LinearMazePositionTracking/SpatialSeriesRaw

PSTH example

https://dandiarchive.org/dandiset/000128/0.220113.0400/files?location=sub-Jenkins

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/df3/e3f/df3e3f73-50ab-42b4-8827-82664ddd474a

See: https://github.com/flatironinstitute/neurosift/issues/93

Here's the one Cody uses as a reference: https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/14a/556/14a55630-cce3-4318-913a-d6d637ac9f4b&tab=view:PSTH%7C/intervals/trials

TwoPhoton example

DANDISET: 000048 draft

sub-222549/sub-222549_ecephys+ophys.nwb

Electrical and optical physiology in in vivo population-scale two-photon calcium imaging

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/bd8/95b/bd895bc6-7a8f-46c0-8564-d94fd4a0b690

DANDISET: 000003 0.230629.1955

sub-YutaMouse33/sub-YutaMouse33_ses-YutaMouse33-150222_behavior+ecephys.nwb

Physiological Properties and Behavioral Correlates of Hippocampal Granule Cells and Mossy Cells

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/c86/cdf/c86cdfba-e1af-45a7-8dfd-d243adc20ced

ElectricalSeries, TimeSeries, SpatialSeries, TimeIntervals, LFP, DecompositionSeries, 68 Units

DANDISET: 000458 0.230317.0039

sub-569068/sub-569068_ses-20210304_behavior+ecephys.nwb

Simultaneous electroencephalography, extracellular electrophysiology, and cortical electrical stimulation in head-fixed mice

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/544/745/5447455e-49ec-4ce0-9a64-4cad767bef7b

EEG, LFP, running speed, 338 Units, 2.5 hr

DANDISET: 000582 draft

sub-10073/sub-10073_ses-17010302_behavior.nwb

Conjunctive Representation of Position, Direction, and Velocity in Entorhinal Cortex

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/a63/6de/a636de8b-7c90-4a41-94be-9da3de53cf82

Position/SpatialSeriesLED1, 8 Units (small raster plot), 10 min

DANDISET: 000238 0.230316.1519

sub-RSpinal-Random-Wave-01/sub-RSpinal-Random-Wave-01_ses-20210724T194543_behavior+ophys.nwb

Thermoregulatory Responses Reticulospinal system

https://flatironinstitute.github.io/neurosift/?p=/nwb&url=https://dandiarchive.s3.amazonaws.com/blobs/a93/0bb/a930bb36-4e47-4158-bc61-6d4a8e77ec9b

50 TwoPhotonSeries, 50 RoiResponseSeries, 1 ImageSegmentation (pixel_mask rather than image_mask), 9 minutes,

Example with .json files (for testing DANDI GUI)

https://dandiarchive.org/dandiset/000026/draft/files?location=sub-EXC022%2Fses-MRI%2Fanat

Example video files in DANDI

This one does play inline (mkv format) https://dandiarchive.org/dandiset/000231/0.220904.1554/files?location=sub-219CR%2Fsub-219CR_ses-20190403T123013_behavior%2Bimage

This one does not (avi format) https://dandiarchive.org/dandiset/000568/0.230705.1633/files?location=sub-fCamk1%2Fsub-fCamk1_ses-fCamk1-200827-sess9-no-raw-data_behavior%2Becephys%2Bimage%2Bogen