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flatironinstitute / CaImAn Public

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Get correct centers of mass from rois.com even when swap_dim is True in get_contours#1370

Merged

pgunn merged 7 commits intoflatironinstitute:devflatironinstitute/CaImAn:devfrom proektlab:contours-com-fixproektlab/CaImAn:contours-com-fixCopy head branch name to clipboard

Jul 9, 2024

+83-56

Conversation Commits7 (7)Checks Files changed

Commits

Commits on Jul 2, 2024

Fix CoM calculation when swap_dim is true
ethanbb
committed
Fix plot_contours to use CoMs from updated get_contours
ethanbb
committed
Add rewritten com function with C/F order and add test
ethanbb
committed

Commits on Jul 5, 2024

Restore individual dimension arguments for com
ethanbb
committed
Add slice_dim option for get_contours and 3D test for swap_dim
ethanbb
committed
Minor changes to make contours more consistent/predictable
ethanbb
committed

Commits on Jul 8, 2024

Use None instead of 'auto'
ethanbb
committed

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