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Which demo exhibits the problem (if applicable): demo_pipeline_cnmfE
How you installed Caiman (pure conda, conda + compile, colab, ..): conda + compile (I think? conda and then editable install)
Details:
The demo demo_pipeline_cnmfE produces the following error. This seems to be due to #1239, and I believe the fix is to just update the name of the key in greedyROI_corr to 'temporal'.
Traceback (most recent call last):
File "/home/ethan/mambaforge/envs/caiman/lib/python3.11/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "/home/ethan/mambaforge/envs/caiman/lib/python3.11/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
^^^^^^^^^^^^^^^^
File "/synology/code/CalciumImaging/CaImAn/caiman/source_extraction/cnmf/map_reduce.py", line 113, in cnmf_patches
cnm = cnm.fit(images)
^^^^^^^^^^^^^^^
File "/synology/code/CalciumImaging/CaImAn/caiman/source_extraction/cnmf/cnmf.py", line 490, in fit
self.initialize(Y)
File "/synology/code/CalciumImaging/CaImAn/caiman/source_extraction/cnmf/cnmf.py", line 949, in initialize
extra_1p = initialize_components(
^^^^^^^^^^^^^^^^^^^^^^
File "/synology/code/CalciumImaging/CaImAn/caiman/source_extraction/cnmf/initialization.py", line 333, in initialize_components
Ain, Cin, _, b_in, f_in, extra_1p = greedyROI_corr(
^^^^^^^^^^^^^^^
File "/synology/code/CalciumImaging/CaImAn/caiman/source_extraction/cnmf/initialization.py", line 1171, in greedyROI_corr
o = options['temporal_params'].copy()
~~~~~~~^^^^^^^^^^^^^^^^^^^
KeyError: 'temporal_params'
The text was updated successfully, but these errors were encountered:
This is already fixed in dev; I thought I had gotten it out there in the last (bugfix) release but I guess not. I'll cut another release to get it out there soon.
Your setup:
dev
branchdemo_pipeline_cnmfE
The demo
demo_pipeline_cnmfE
produces the following error. This seems to be due to #1239, and I believe the fix is to just update the name of the key ingreedyROI_corr
to'temporal'
.The text was updated successfully, but these errors were encountered: