Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

how to label in batch mode #65

Open
jessiya825 opened this issue Apr 22, 2021 · 1 comment
Open

how to label in batch mode #65

jessiya825 opened this issue Apr 22, 2021 · 1 comment

Comments

@jessiya825
Copy link

Thanks for your Trainable Segmentation ! It is useful !

When I label the cell, I can create training data by
makeOval(8,113, 46, 104);
call("trainableSegmentation.Weka_Segmentation.addTrace", "1", "1");

But I have so many training images, and labeling every cell is time-consuming.

I have gained the binary image, and the label is showed by mask
(notice: all masks in one image belong to the same class), such as:

image

For each image, I want to detect the mask and label all masks to one class. What should I do ?

Thank you~

@iarganda
Copy link
Collaborator

Hello @jessiya825

In Fiji you can create a selection (Edit > Selection > Create Selection) out of the binary image you have and add the whole thing as a "trace". I hope that helps!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants