forked from thenetcircle/faiss4j
-
Notifications
You must be signed in to change notification settings - Fork 0
/
swigfaiss4j.swig
507 lines (396 loc) · 11.9 KB
/
swigfaiss4j.swig
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
/**
* Copyright (c) 2015-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the BSD+Patents license found in the
* LICENSE file in the root directory of this source tree.
*/
// -*- C++ -*-
// This file describes the C++-scripting language bridge for both Lua
// and Python It contains mainly includes and a few macros. There are
// 3 preprocessor macros of interest:
// GPU_WRAPPER: also compile interfaces for GPU.
#ifdef SWIGJAVA
%include "arrays_java.i"
//%apply int[] {int *};
//%apply double[] {double *};
//%apply float[] {float *};
//%apply long[] {long *};
%include "carrays.i"
%array_class(int, intArray);
%array_class(float, floatArray);
%array_class(long, longArray);
%array_class(double, doubleArray);
#endif
#ifdef GPU_WRAPPER
%module swigfaiss_gpu;
#else
%module swigfaiss;
#endif
%rename(faiss_RangeSearchPartialResult_finalize) faiss::RangeSearchPartialResult::finalize();
// fbode SWIG fails on warnings, so make them non fatal
#pragma SWIG nowarn=321
#pragma SWIG nowarn=403
#pragma SWIG nowarn=325
#pragma SWIG nowarn=389
#pragma SWIG nowarn=341
typedef unsigned long uint64_t;
typedef uint64_t size_t;
typedef int int32_t;
typedef unsigned char uint8_t;
#define __restrict
/*******************************************************************
* Copied verbatim to wrapper. Contains the C++-visible includes, and
* the language includes for their respective matrix libraries.
*******************************************************************/
%{
#include <stdint.h>
#include <omp.h>
#include "IndexFlat.h"
#include "VectorTransform.h"
#include "IndexLSH.h"
#include "IndexPQ.h"
#include "IndexIVF.h"
#include "IndexIVFPQ.h"
#include "IndexIVFFlat.h"
#include "IndexScalarQuantizer.h"
#include "HNSW.h"
#include "IndexHNSW.h"
#include "MetaIndexes.h"
#include "FaissAssert.h"
#include "IndexBinaryFlat.h"
#include "IndexBinaryIVF.h"
#include "IndexBinaryFromFloat.h"
#include "IndexBinaryHNSW.h"
#include "index_io.h"
#include "IVFlib.h"
#include "utils.h"
#include "Heap.h"
#include "AuxIndexStructures.h"
#include "OnDiskInvertedLists.h"
#include "Clustering.h"
#include "hamming.h"
#include "AutoTune.h"
%}
/*******************************************************************
* Types of vectors we want to manipulate at the scripting language
* level.
*******************************************************************/
// simplified interface for vector
namespace std {
template<class T>
class vector {
public:
vector();
void push_back(T);
void clear();
T * data();
size_t size();
T at (size_t n) const;
void resize (size_t n);
void swap (vector<T> & other);
};
};
%template(FloatVector) std::vector<float>;
%template(DoubleVector) std::vector<double>;
%template(ByteVector) std::vector<uint8_t>;
%template(CharVector) std::vector<char>;
// NOTE(hoss): Using unsigned long instead of uint64_t because OSX defines
// uint64_t as unsigned long long, which SWIG is not aware of.
%template(Uint64Vector) std::vector<unsigned long>;
%template(LongVector) std::vector<long>;
%template(IntVector) std::vector<int>;
%template(VectorTransformVector) std::vector<faiss::VectorTransform*>;
%template(OperatingPointVector) std::vector<faiss::OperatingPoint>;
%template(InvertedListsPtrVector) std::vector<faiss::InvertedLists*>;
%template(FloatVectorVector) std::vector<std::vector<float> >;
%template(ByteVectorVector) std::vector<std::vector<unsigned char> >;
%template(LongVectorVector) std::vector<std::vector<long> >;
#ifdef GPU_WRAPPER
%template(GpuResourcesVector) std::vector<faiss::gpu::GpuResources*>;
#endif
%include <std_string.i>
// produces an error on the Mac
%ignore faiss::hamming;
/*******************************************************************
* Parse headers
*******************************************************************/
%ignore *::cmp;
%include "Heap.h"
%include "hamming.h"
int get_num_gpus();
#ifdef GPU_WRAPPER
%{
#include "gpu/StandardGpuResources.h"
#include "gpu/GpuIndicesOptions.h"
#include "gpu/GpuClonerOptions.h"
#include "gpu/utils/MemorySpace.h"
#include "gpu/GpuIndex.h"
#include "gpu/GpuIndexFlat.h"
#include "gpu/GpuIndexIVF.h"
#include "gpu/GpuIndexIVFPQ.h"
#include "gpu/GpuIndexIVFFlat.h"
#include "gpu/GpuIndexBinaryFlat.h"
#include "gpu/IndexProxy.h"
#include "gpu/GpuAutoTune.h"
#include "gpu/GpuDistance.h"
int get_num_gpus()
{
return faiss::gpu::getNumDevices();
}
%}
// causes weird wrapper bug
%ignore *::getMemoryManager;
%ignore *::getMemoryManagerCurrentDevice;
%include "gpu/GpuResources.h"
%include "gpu/StandardGpuResources.h"
#else
%{
int get_num_gpus()
{
return 0;
}
%}
#endif
%include "utils.h"
%include "Index.h"
%include "Clustering.h"
%ignore faiss::ProductQuantizer::get_centroids(size_t,size_t) const;
%include "ProductQuantizer.h"
%include "VectorTransform.h"
%include "IndexFlat.h"
%include "IndexLSH.h"
%include "PolysemousTraining.h"
%include "IndexPQ.h"
%include "InvertedLists.h"
%ignore InvertedListScanner;
%ignore BinaryInvertedListScanner;
%include "IndexIVF.h"
// NOTE(hoss): SWIG (wrongly) believes the overloaded const version shadows the
// non-const one.
%warnfilter(509) extract_index_ivf;
%include "IVFlib.h"
%include "IndexScalarQuantizer.h"
%include "HNSW.h"
%include "IndexHNSW.h"
%include "IndexIVFFlat.h"
%include "OnDiskInvertedLists.h"
%ignore faiss::IndexIVFPQ::alloc_type;
%include "IndexIVFPQ.h"
%include "IndexBinary.h"
%include "IndexBinaryFlat.h"
%include "IndexBinaryIVF.h"
%include "IndexBinaryFromFloat.h"
%include "IndexBinaryHNSW.h"
%include "MetaIndexes.h"
#ifdef GPU_WRAPPER
// quiet SWIG warnings
%ignore faiss::gpu::GpuIndexIVF::GpuIndexIVF;
%ignore faiss::gpu::IndexProxy::at(int) const;
%include "gpu/GpuIndicesOptions.h"
%include "gpu/GpuClonerOptions.h"
%include "gpu/utils/MemorySpace.h"
%include "gpu/GpuIndex.h"
%include "gpu/GpuIndexFlat.h"
%include "gpu/GpuIndexIVF.h"
%include "gpu/GpuIndexIVFPQ.h"
%include "gpu/GpuIndexIVFFlat.h"
%include "gpu/GpuIndexBinaryFlat.h"
%include "gpu/IndexProxy.h"
%include "gpu/GpuDistance.h"
#endif
/*******************************************************************
* downcast return of some functions so that the sub-class is used
* instead of the generic upper-class.
*******************************************************************/
#ifdef SWIGJAVA
%define DOWNCAST(subclass)
if (dynamic_cast<faiss::subclass *> ($1)) {
faiss::subclass *instance_ptr = (faiss::subclass *)$1;
$result = (jlong)instance_ptr;
} else
%enddef
%define DOWNCAST_GPU(subclass)
if (dynamic_cast<faiss::gpu::subclass *> ($1)) {
faiss::subclass *instance_ptr = (faiss::subclass *)$1;
$result = (jlong)instance_ptr;
} else
%enddef
#endif
%newobject read_index;
%newobject read_index_binary;
%newobject read_VectorTransform;
%newobject read_ProductQuantizer;
%newobject clone_index;
%newobject clone_VectorTransform;
// Subclasses should appear before their parent
%typemap(out) faiss::Index * {
DOWNCAST ( IndexIDMap )
DOWNCAST ( IndexShards )
DOWNCAST ( IndexIVFPQR )
DOWNCAST ( IndexIVFPQ )
DOWNCAST ( IndexIVFScalarQuantizer )
DOWNCAST ( IndexIVFFlatDedup )
DOWNCAST ( IndexIVFFlat )
DOWNCAST ( IndexIVF )
DOWNCAST ( IndexFlat )
DOWNCAST ( IndexPQ )
DOWNCAST ( IndexScalarQuantizer )
DOWNCAST ( IndexLSH )
DOWNCAST ( IndexPreTransform )
DOWNCAST ( MultiIndexQuantizer )
DOWNCAST ( IndexHNSWFlat )
DOWNCAST ( IndexHNSWPQ )
DOWNCAST ( IndexHNSWSQ )
DOWNCAST ( IndexHNSW2Level )
DOWNCAST ( Index2Layer )
#ifdef GPU_WRAPPER
DOWNCAST_GPU ( IndexProxy )
DOWNCAST_GPU ( GpuIndexIVFPQ )
DOWNCAST_GPU ( GpuIndexIVFFlat )
DOWNCAST_GPU ( GpuIndexFlat )
#endif
// default for non-recognized classes
DOWNCAST ( Index )
if ($1 == NULL)
{
#ifdef SWIGJAVA
$result = 0;
#endif
// Lua does not need a push for nil
} else {
assert(false);
}
}
%typemap(out) faiss::IndexBinary * {
DOWNCAST ( IndexBinaryIVF )
DOWNCAST ( IndexBinaryFlat )
DOWNCAST ( IndexBinaryFromFloat )
DOWNCAST ( IndexBinaryHNSW )
#ifdef GPU_WRAPPER
DOWNCAST_GPU ( GpuIndexBinaryFlat )
#endif
// default for non-recognized classes
DOWNCAST ( IndexBinary )
if ($1 == NULL)
{
#ifdef SWIGJAVA
$result = 0;
#endif
// Lua does not need a push for nil
} else {
assert(false);
}
}
%typemap(out) faiss::VectorTransform * {
DOWNCAST (RemapDimensionsTransform)
DOWNCAST (OPQMatrix)
DOWNCAST (PCAMatrix)
DOWNCAST (RandomRotationMatrix)
DOWNCAST (LinearTransform)
DOWNCAST (NormalizationTransform)
DOWNCAST (VectorTransform)
{
assert(false);
}
}
// just to downcast pointers that come from elsewhere (eg. direct
// access to object fields)
%inline %{
faiss::Index * downcast_index (faiss::Index *index)
{
return index;
}
faiss::VectorTransform * downcast_VectorTransform (faiss::VectorTransform *vt)
{
return vt;
}
faiss::IndexBinary * downcast_IndexBinary (faiss::IndexBinary *index)
{
return index;
}
%}
%include "index_io.h"
%newobject index_factory;
%newobject index_binary_factory;
%include "AutoTune.h"
#ifdef GPU_WRAPPER
%newobject index_gpu_to_cpu;
%newobject index_cpu_to_gpu;
%newobject index_cpu_to_gpu_multiple;
%include "gpu/GpuAutoTune.h"
#endif
/*******************************************************************
* How should the template objects apprear in the scripting language?
*******************************************************************/
// answer: the same as the C++ typedefs, but we still have to redefine them
%template() faiss::CMin<float, long>;
%template() faiss::CMin<int, long>;
%template() faiss::CMax<float, long>;
%template() faiss::CMax<int, long>;
%template(float_minheap_array_t) faiss::HeapArray<faiss::CMin<float, long> >;
%template(int_minheap_array_t) faiss::HeapArray<faiss::CMin<int, long> >;
%template(float_maxheap_array_t) faiss::HeapArray<faiss::CMax<float, long> >;
%template(int_maxheap_array_t) faiss::HeapArray<faiss::CMax<int, long> >;
/*******************************************************************
* Expose a few basic functions
*******************************************************************/
void omp_set_num_threads (int num_threads);
int omp_get_max_threads ();
void *memcpy(void *dest, const void *src, size_t n);
/*******************************************************************
* For Faiss/Pytorch interop via pointers encoded as longs
*******************************************************************/
%inline %{
float * cast_integer_to_float_ptr (long x) {
return (float*)x;
}
long * cast_integer_to_long_ptr (long x) {
return (long*)x;
}
int * cast_integer_to_int_ptr (long x) {
return (int*)x;
}
%}
/*******************************************************************
* Range search interface
*******************************************************************/
%ignore faiss::BufferList::Buffer;
%ignore faiss::RangeSearchPartialResult::QueryResult;
%ignore faiss::IDSelectorBatch::set;
%ignore faiss::IDSelectorBatch::bloom;
%include "AuxIndexStructures.h"
%{
// may be useful for lua code launched in background from shell
#include <signal.h>
void ignore_SIGTTIN() {
signal(SIGTTIN, SIG_IGN);
}
%}
void ignore_SIGTTIN();
%inline %{
// numpy misses a hash table implementation, hence this class. It
// represents not found values as -1 like in the Index implementation
struct MapLong2Long {
std::unordered_map<long, long> map;
void add(size_t n, const long *keys, const long *vals) {
map.reserve(map.size() + n);
for (size_t i = 0; i < n; i++) {
map[keys[i]] = vals[i];
}
}
long search(long key) {
if (map.count(key) == 0) {
return -1;
} else {
return map[key];
}
}
void search_multiple(size_t n, const long *keys, long * vals) {
for (size_t i = 0; i < n; i++) {
vals[i] = search(keys[i]);
}
}
};
%}
// End of file...