candia_env.yaml

channels:
  - tensorly
  - intel
  - anaconda
  - pytorch
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python=3.6
  - cython
  - openjdk=8.0.192
  - tensorly=0.4.3
  - pytorch=1.1.0
  - cudatoolkit=9.2
  - scipy=1.2.1
  - astropy=3.0.5
  - pandas=0.25
  - pyarrow=0.14
  - snakemake-minimal=5.7.4
  - matplotlib=3.0.1
  - matplotlib-venn=0.11.5
  - pyspark=2.4.3
  - pytest=5.2.2
  - pyyaml=5.1
  - tqdm=4.31.1
  - crux-toolkit=3.2
  - tpp=5.0.0
  - perl
  - perl-apache-test
  - perl-app-cpanminus
  - perl-archive-tar
  - perl-carp
  - perl-compress-raw-bzip2
  - perl-compress-raw-zlib
  - perl-constant
  - perl-data-dumper
  - perl-data-optlist
  - perl-devel-symdump
  - perl-digest-hmac
  - perl-encode-locale
  - perl-exporter
  - perl-exporter-tiny
  - perl-extutils-makemaker
  - perl-file-copy-recursive
  - perl-file-listing
  - perl-file-path
  - perl-file-slurp-tiny
  - perl-file-temp
  - perl-findbin-libs
  - perl-getopt-long
  - perl-html-parser
  - perl-html-tagset
  - perl-http-cookies
  - perl-http-daemon
  - perl-http-date
  - perl-http-message
  - perl-http-negotiate
  - perl-io-compress
  - perl-io-html
  - perl-io-socket-ssl
  - perl-io-zlib
  - perl-lib
  - perl-libwww-perl
  - perl-list-moreutils
  - perl-lwp-mediatypes
  - perl-mime-base64
  - perl-module-fromperlver
  - perl-net-http
  - perl-net-ssleay
  - perl-ntlm
  - perl-params-util
  - perl-parent
  - perl-pathtools
  - perl-perl-version
  - perl-scalar-list-utils
  - perl-sub-exporter
  - perl-sub-install
  - perl-test-deep
  - perl-test-more
  - perl-test-simple
  - perl-test2
  - perl-threaded
  - perl-uri
  - perl-version-next
  - perl-www-robotrules
  - perl-xml-parser
  - perl-xsloader
  - pip=9.0
  - pip:
      - pyopenms==2.4.0
      - pyteomics==4.1.2
      - msproteomicstools==0.11.0
      - intervaltree==2.1.0
      - coloredlogs==10.0