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requirements.yml
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requirements.yml
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name: var_call
channels:
- bioconda
- defaults
dependencies:
- _anaconda_depends=2021.11=py38_0
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- alabaster=0.7.12=pyhd3eb1b0_0
- anaconda=custom=py38_1
- anaconda-client=1.9.0=py38h06a4308_0
- anaconda-project=0.10.2=pyhd3eb1b0_0
- anyio=2.2.0=py38h06a4308_1
- appdirs=1.4.4=pyhd3eb1b0_0
- argh=0.26.2=py38_0
- argon2-cffi=20.1.0=py38h27cfd23_1
- arrow=0.13.1=py38_0
- asn1crypto=1.4.0=py_0
- astroid=2.6.6=py38h06a4308_0
- astropy=5.0=py38h09021b7_0
- async_generator=1.10=pyhd3eb1b0_0
- atomicwrites=1.4.0=py_0
- attrs=21.4.0=pyhd3eb1b0_0
- autopep8=1.6.0=pyhd3eb1b0_0
- babel=2.9.1=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- backports=1.1=pyhd3eb1b0_0
- backports.shutil_get_terminal_size=1.0.0=pyhd3eb1b0_3
- beautifulsoup4=4.10.0=pyh06a4308_0
- binaryornot=0.4.4=pyhd3eb1b0_1
- bitarray=2.3.5=py38h7f8727e_0
- bkcharts=0.2=py38_0
- black=19.10b0=py_0
- blas=1.0=mkl
- bleach=4.1.0=pyhd3eb1b0_0
- blosc=1.21.0=h8c45485_0
- bokeh=2.4.2=py38h06a4308_0
- boto=2.49.0=py38_0
- bottleneck=1.3.2=py38heb32a55_1
- brotli=1.0.9=he6710b0_2
- brotlipy=0.7.0=py38h27cfd23_1003
- brunsli=0.1=h2531618_0
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2021.10.26=h06a4308_2
- cairo=1.16.0=hf32fb01_1
- certifi=2021.10.8=py38h06a4308_2
- cffi=1.15.0=py38hd667e15_1
- cfitsio=3.470=hf0d0db6_6
- chardet=4.0.0=py38h06a4308_1003
- charls=2.2.0=h2531618_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.0.3=pyhd3eb1b0_0
- cloudpickle=2.0.0=pyhd3eb1b0_0
- clyent=1.2.2=py38_1
- colorama=0.4.4=pyhd3eb1b0_0
- conda=4.11.0=py38h06a4308_0
- conda-content-trust=0.1.1=pyhd3eb1b0_0
- conda-pack=0.6.0=pyhd3eb1b0_0
- conda-package-handling=1.7.3=py38h27cfd23_1
- conda-token=0.3.0=pyhd3eb1b0_0
- contextlib2=0.6.0.post1=pyhd3eb1b0_0
- cookiecutter=1.7.2=pyhd3eb1b0_0
- coreutils=8.25=1
- cryptography=36.0.0=py38h9ce1e76_0
- curl=7.80.0=h7f8727e_0
- cycler=0.11.0=pyhd3eb1b0_0
- cython=0.29.25=py38hdbfa776_0
- cytoolz=0.11.0=py38h7b6447c_0
- daal4py=2021.4.0=py38h78b71dc_0
- dal=2021.4.0=h06a4308_729
- dask=2021.10.0=pyhd3eb1b0_0
- dask-core=2021.10.0=pyhd3eb1b0_0
- dataclasses=0.8=pyh6d0b6a4_7
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- diff-match-patch=20200713=pyhd3eb1b0_0
- distributed=2021.10.0=py38h06a4308_0
- docutils=0.17.1=py38h06a4308_1
- entrypoints=0.3=py38_0
- et_xmlfile=1.1.0=py38h06a4308_0
- expat=2.4.1=h2531618_2
- fastcache=1.1.0=py38h7b6447c_0
- filelock=3.4.2=pyhd3eb1b0_0
- flake8=3.9.2=pyhd3eb1b0_0
- flask=1.1.2=pyhd3eb1b0_0
- fontconfig=2.13.1=h6c09931_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- fsspec=2022.1.0=pyhd3eb1b0_0
- get_terminal_size=1.0.0=haa9412d_0
- gevent=21.8.0=py38h7f8727e_1
- giflib=5.2.1=h7b6447c_0
- glib=2.69.1=h4ff587b_1
- glob2=0.7=pyhd3eb1b0_0
- gmp=6.2.1=h2531618_2
- gmpy2=2.0.8=py38hd5f6e3b_3
- graphite2=1.3.14=h23475e2_0
- greenlet=1.1.1=py38h295c915_0
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- h5py=2.10.0=py38h7918eee_0
- harfbuzz=2.8.1=h6f93f22_0
- hdf5=1.10.4=hb1b8bf9_0
- heapdict=1.0.1=pyhd3eb1b0_0
- html5lib=1.1=pyhd3eb1b0_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- imagecodecs=2021.8.26=py38h4cda21f_0
- imageio=2.9.0=pyhd3eb1b0_0
- imagesize=1.3.0=pyhd3eb1b0_0
- importlib-metadata=4.8.2=py38h06a4308_0
- importlib_metadata=4.8.2=hd3eb1b0_0
- inflection=0.5.1=py38h06a4308_0
- iniconfig=1.1.1=pyhd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- intervaltree=3.1.0=pyhd3eb1b0_0
- ipykernel=6.4.1=py38h06a4308_1
- ipython=7.31.1=py38h06a4308_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.5=pyhd3eb1b0_1
- isort=5.9.3=pyhd3eb1b0_0
- itsdangerous=2.0.1=pyhd3eb1b0_0
- jbig=2.1=hdba287a_0
- jdcal=1.4.1=pyhd3eb1b0_0
- jedi=0.18.1=py38h06a4308_0
- jeepney=0.7.1=pyhd3eb1b0_0
- jinja2=2.11.3=pyhd3eb1b0_0
- jinja2-time=0.2.0=pyhd3eb1b0_2
- joblib=1.1.0=pyhd3eb1b0_0
- jpeg=9d=h7f8727e_0
- json5=0.9.6=pyhd3eb1b0_0
- jsonschema=3.2.0=pyhd3eb1b0_2
- jupyter=1.0.0=py38_7
- jupyter_client=6.1.12=pyhd3eb1b0_0
- jupyter_console=6.4.0=pyhd3eb1b0_0
- jupyter_core=4.9.1=py38h06a4308_0
- jupyter_server=1.4.1=py38h06a4308_0
- jupyterlab=3.2.1=pyhd3eb1b0_1
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.10.2=pyhd3eb1b0_1
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- jxrlib=1.1=h7b6447c_2
- keyring=23.4.0=py38h06a4308_0
- kiwisolver=1.3.1=py38h2531618_0
- krb5=1.19.2=hac12032_0
- lazy-object-proxy=1.6.0=py38h27cfd23_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.35.1=h7274673_9
- lerc=3.0=h295c915_0
- libaec=1.0.4=he6710b0_1
- libarchive=3.4.2=h62408e4_0
- libcurl=7.80.0=h0b77cf5_0
- libdeflate=1.8=h7f8727e_5
- libedit=3.1.20210910=h7f8727e_0
- libev=4.33=h7f8727e_1
- libffi=3.3=he6710b0_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- liblief=0.10.1=he6710b0_0
- libllvm11=11.1.0=h3826bc1_0
- libnghttp2=1.46.0=hce63b2e_0
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.18=h7b6447c_0
- libspatialindex=1.9.3=h2531618_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtiff=4.2.0=h85742a9_0
- libtool=2.4.6=h7b6447c_1005
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libwebp=1.2.0=h89dd481_0
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.12=h03d6c58_0
- libxslt=1.1.34=hc22bd24_0
- libzopfli=1.0.3=he6710b0_0
- llvmlite=0.37.0=py38h295c915_1
- locket=0.2.1=py38h06a4308_1
- lxml=4.7.1=py38h1f438cf_1
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h7b6447c_2
- markupsafe=1.1.1=py38h7b6447c_0
- matplotlib=3.5.0=py38h06a4308_0
- matplotlib-base=3.5.0=py38h3ed280b_0
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- mccabe=0.6.1=py38_1
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- mock=4.0.3=pyhd3eb1b0_0
- more-itertools=8.12.0=pyhd3eb1b0_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpi=1.0=mpich
- mpich=3.3.2=hc856adb_0
- mpmath=1.2.1=py38h06a4308_0
- msgpack-python=1.0.2=py38hff7bd54_1
- multipledispatch=0.6.0=py38_0
- munkres=1.1.4=py_0
- mypy_extensions=0.4.3=py38h06a4308_1
- nbclassic=0.2.6=pyhd3eb1b0_0
- nbclient=0.5.3=pyhd3eb1b0_0
- nbconvert=6.3.0=py38h06a4308_0
- nbformat=5.1.3=pyhd3eb1b0_0
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.1=pyhd3eb1b0_0
- networkx=2.6.3=pyhd3eb1b0_0
- nextflow=19.01.0=ha4d7672_4
- nltk=3.6.5=pyhd3eb1b0_0
- nose=1.3.7=pyhd3eb1b0_1008
- notebook=6.4.6=py38h06a4308_0
- numba=0.54.1=py38h51133e4_0
- numexpr=2.8.1=py38h6abb31d_0
- numpy=1.20.3=py38hf144106_0
- numpy-base=1.20.3=py38h74d4b33_0
- numpydoc=1.2=pyhd3eb1b0_0
- olefile=0.46=pyhd3eb1b0_0
- openjdk=8.0.152=h7b6447c_3
- openjpeg=2.4.0=h3ad879b_0
- openpyxl=3.0.9=pyhd3eb1b0_0
- openssl=1.1.1m=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.3.5=py38h8c16a72_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- pango=1.45.3=hd140c19_0
- parso=0.8.3=pyhd3eb1b0_0
- partd=1.2.0=pyhd3eb1b0_0
- patchelf=0.13=h295c915_0
- path=16.2.0=pyhd3eb1b0_0
- path.py=12.5.0=hd3eb1b0_0
- pathlib2=2.3.6=py38h06a4308_2
- pathspec=0.7.0=py_0
- patsy=0.5.2=py38h06a4308_0
- pcre=8.45=h295c915_0
- pep8=1.7.1=py38_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=8.4.0=py38h5aabda8_0
- pip=21.2.4=py38h06a4308_0
- pixman=0.40.0=h7f8727e_1
- pkginfo=1.8.2=pyhd3eb1b0_0
- pluggy=1.0.0=py38h06a4308_0
- ply=3.11=py38_0
- poyo=0.5.0=pyhd3eb1b0_0
- prometheus_client=0.13.1=pyhd3eb1b0_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- prompt_toolkit=3.0.20=hd3eb1b0_0
- psutil=5.8.0=py38h27cfd23_1
- ptyprocess=0.7.0=pyhd3eb1b0_2
- py=1.10.0=pyhd3eb1b0_0
- py-lief=0.10.1=py38h403a769_0
- pycodestyle=2.7.0=pyhd3eb1b0_0
- pycosat=0.6.3=py38h7b6447c_1
- pycparser=2.21=pyhd3eb1b0_0
- pycurl=7.44.1=py38h8f2d780_1
- pydocstyle=6.1.1=pyhd3eb1b0_0
- pyerfa=2.0.0=py38h27cfd23_0
- pyflakes=2.3.1=pyhd3eb1b0_0
- pygments=2.10.0=pyhd3eb1b0_0
- pylint=2.9.6=py38h06a4308_1
- pyls-spyder=0.4.0=pyhd3eb1b0_0
- pyodbc=4.0.32=py38h295c915_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.9.2=py38h05f1152_4
- pyrsistent=0.18.0=py38heee7806_0
- pysocks=1.7.1=py38h06a4308_0
- pytables=3.6.1=py38h9fd0a39_0
- pytest=6.2.5=py38h06a4308_2
- python=3.8.12=h12debd9_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-libarchive-c=2.9=pyhd3eb1b0_1
- python-lsp-black=1.0.0=pyhd3eb1b0_0
- python-lsp-jsonrpc=1.0.0=pyhd3eb1b0_0
- python-lsp-server=1.2.4=pyhd3eb1b0_0
- python-slugify=5.0.2=pyhd3eb1b0_0
- pytz=2021.3=pyhd3eb1b0_0
- pywavelets=1.1.1=py38h7b6447c_2
- pyxdg=0.27=pyhd3eb1b0_0
- pyyaml=6.0=py38h7f8727e_1
- pyzmq=22.3.0=py38h295c915_2
- qdarkstyle=3.0.2=pyhd3eb1b0_0
- qstylizer=0.1.10=pyhd3eb1b0_0
- qt=5.9.7=h5867ecd_1
- qtawesome=1.0.3=pyhd3eb1b0_0
- qtconsole=5.2.2=pyhd3eb1b0_0
- qtpy=1.11.2=pyhd3eb1b0_0
- readline=8.1.2=h7f8727e_1
- regex=2021.11.2=py38h7f8727e_0
- requests=2.27.1=pyhd3eb1b0_0
- ripgrep=12.1.1=0
- rope=0.22.0=pyhd3eb1b0_0
- rtree=0.9.7=py38h06a4308_1
- ruamel_yaml=0.15.100=py38h27cfd23_0
- scikit-image=0.18.3=py38h51133e4_0
- scikit-learn=1.0.2=py38h51133e4_1
- scikit-learn-intelex=2021.4.0=py38h06a4308_0
- scipy=1.7.3=py38hc147768_0
- seaborn=0.11.2=pyhd3eb1b0_0
- secretstorage=3.3.1=py38h06a4308_0
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=58.0.4=py38h06a4308_0
- simplegeneric=0.8.1=py38_2
- singledispatch=3.7.0=pyhd3eb1b0_1001
- sip=4.19.13=py38h295c915_0
- six=1.16.0=pyhd3eb1b0_0
- snappy=1.1.8=he6710b0_0
- sniffio=1.2.0=py38h06a4308_1
- snowballstemmer=2.2.0=pyhd3eb1b0_0
- sortedcollections=2.1.0=pyhd3eb1b0_0
- sortedcontainers=2.4.0=pyhd3eb1b0_0
- soupsieve=2.3.1=pyhd3eb1b0_0
- sphinx=4.4.0=pyhd3eb1b0_0
- sphinxcontrib=1.0=py38_1
- sphinxcontrib-applehelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-devhelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-htmlhelp=2.0.0=pyhd3eb1b0_0
- sphinxcontrib-jsmath=1.0.1=pyhd3eb1b0_0
- sphinxcontrib-qthelp=1.0.3=pyhd3eb1b0_0
- sphinxcontrib-serializinghtml=1.1.5=pyhd3eb1b0_0
- sphinxcontrib-websupport=1.2.4=py_0
- spyder=5.1.5=py38h06a4308_1
- spyder-kernels=2.1.3=py38h06a4308_0
- sqlalchemy=1.4.27=py38h7f8727e_0
- sqlite=3.37.2=hc218d9a_0
- statsmodels=0.12.2=py38h27cfd23_0
- sympy=1.9=py38h06a4308_0
- tbb=2021.5.0=hd09550d_0
- tbb4py=2021.5.0=py38hd09550d_0
- tblib=1.7.0=pyhd3eb1b0_0
- terminado=0.9.4=py38h06a4308_0
- testpath=0.5.0=pyhd3eb1b0_0
- text-unidecode=1.3=pyhd3eb1b0_0
- textdistance=4.2.1=pyhd3eb1b0_0
- threadpoolctl=2.2.0=pyh0d69192_0
- three-merge=0.1.1=pyhd3eb1b0_0
- tifffile=2021.7.2=pyhd3eb1b0_2
- tinycss=0.4=pyhd3eb1b0_1002
- tk=8.6.11=h1ccaba5_0
- toml=0.10.2=pyhd3eb1b0_0
- toolz=0.11.2=pyhd3eb1b0_0
- tornado=6.1=py38h27cfd23_0
- tqdm=4.62.3=pyhd3eb1b0_1
- traitlets=5.1.1=pyhd3eb1b0_0
- typed-ast=1.4.3=py38h7f8727e_1
- typing_extensions=3.10.0.2=pyh06a4308_0
- ujson=4.2.0=py38h295c915_0
- unicodecsv=0.14.1=py38_0
- unidecode=1.2.0=pyhd3eb1b0_0
- unixodbc=2.3.9=h7b6447c_0
- urllib3=1.26.8=pyhd3eb1b0_0
- watchdog=2.1.6=py38h06a4308_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py38_1
- werkzeug=2.0.2=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- whichcraft=0.6.1=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py38_0
- wrapt=1.12.1=py38h7b6447c_1
- wurlitzer=3.0.2=py38h06a4308_0
- xlrd=2.0.1=pyhd3eb1b0_0
- xlsxwriter=3.0.2=pyhd3eb1b0_0
- xlwt=1.3.0=py38_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- yapf=0.31.0=pyhd3eb1b0_0
- zeromq=4.3.4=h2531618_0
- zfp=0.5.5=h295c915_6
- zict=2.0.0=pyhd3eb1b0_0
- zipp=3.7.0=pyhd3eb1b0_0
- zlib=1.2.11=h7f8727e_4
- zope=1.0=py38_1
- zope.event=4.5.0=py38_0
- zope.interface=5.4.0=py38h7f8727e_0
- zstd=1.4.9=haebb681_0
- pip:
- biopython==1.79
- htseq==1.99.2
- pysam==0.18.0
prefix: /home/adminmalik/anaconda3/envs/var_call