Makefile

FILES := results/kamvar2017population.md #\
         results/kamvar2017population.pdf \
         results/kamvar2017population.html \
         results/kamvar2017population.docx

all : results/bootstrap.txt $(FILES) publication

results/bootstrap.txt : code/boot.R DESCRIPTION code/kop
	R --slave -e "options(repos = 'https://cran.rstudio.com'); source('$<', echo = TRUE)" &> $@

results/%.md : code/%.Rmd
	R --slave -e "ezknitr::ezknit(file = '$<', \
	                              out_dir = '$(@D)', \
	                              fig_dir = './figures/$*', \
	                              keep_html = FALSE \
	                              )"
results/%.html : code/%.Rmd
	R --slave -e "ezknitr::ezknit(file = '$<', \
	                              out_dir = '$(@D)', \
	                              fig_dir = './figures/$*' \
	                              )"

results/%.pdf : code/%.Rmd
	R --slave -e "rmarkdown::render(input = '$<', \
	                                output_format = rmarkdown::pdf_document(), \
	                                knit_root_dir = here::here() \
	                                )"
	mv $(<D)/$(@F) $@
	rm $(<D)/$*.tex
	rm -rf $(<D)/results

results/%.docx : code/%.Rmd code/template.docx
	R --slave -e "rmarkdown::render(input = '$<', \
	              output_format = rmarkdown::word_document(reference_docx = here::here('code/template.docx')), \
	              knit_root_dir = here::here() \
	              )"
	mv $(<D)/$(@F) $@

.PHONY : publication

publication :
	$(MAKE) -C manuscript
	$(MAKE) -C manuscript clean

.PHONY : clean

clean :
	$(RM) $(FILES)
	$(RM) results/bootstrap.txt
	$(MAKE) -C manuscript clean