From ba6acf2505c33d074e829430f8870082421076a0 Mon Sep 17 00:00:00 2001 From: GitHub Action - check truth Date: Wed, 30 Mar 2022 13:32:43 +0000 Subject: [PATCH] Check truth data --- code/validation/check_truth.txt | 7 + data-truth/README.md | 14 +- data-truth/plots/revisions-Cases.svg | 24 +- data-truth/plots/revisions-Deaths.svg | 22 +- .../plots/revisions-Hospitalizations.svg | 219 ++++++++---------- 5 files changed, 139 insertions(+), 147 deletions(-) diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt index a2892f6014..246444d5a0 100644 --- a/code/validation/check_truth.txt +++ b/code/validation/check_truth.txt @@ -1808,3 +1808,10 @@ Latest check of truth data: 2022-03-29 No errors detected. +Latest check of truth data: 2022-03-30 + +WARNING +Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/JHU/truth_JHU-Incident Deaths.csv' at 2022-03-29: + +- Negative incidence in the following locations: ['Spain']. + diff --git a/data-truth/README.md b/data-truth/README.md index 781248daa6..ee3f1a3694 100644 --- a/data-truth/README.md +++ b/data-truth/README.md @@ -24,17 +24,19 @@ for more on forecast formatting. #### Potential issues in the JHU dataset -As of 2022-03-29 +As of 2022-03-30 | country | created | updated | issue | message | url | | :------ | :--------- | :--------- | :------------------------------------------------------------------------------------------------------ | :------------------------------------------------------ | :------------------------------------------------------- | +| france | 2022-03-29 | 2022-03-30 | france: under reported cases on 24th and 25th feb | For France, daily cases on the dates Feb 24th 2022… | | +| germany | 2022-03-30 | 2022-03-30 | suspicious data for germany series - number of confirmed cases | Hi Team, We have observed that the value publishe… | | +| germany | 2022-03-29 | 2022-03-29 | discrepancy in the data of germany. | For Germany, As per the \[JHU\](… | | +| germany | 2022-02-01 | 2022-03-29 | discrepancy in germany new cases data of 29th & 30th jan. | For Germany, As per the \[feed\](… | | | germany | 2022-03-25 | 2022-03-28 | germany, niedersachsen to unknown no update in cases since 2022-03-21 (csse\_covid\_19\_daily\_reports) | Hi all, Half of the German states (+Unknown) do n… | | | france | 2022-03-03 | 2022-03-09 | death data is not correct for france: negative value & discrepancy | \[JHU Feed\](… | | | spain | 2022-03-01 | 2022-03-01 | negative data entry for country spain, france | Hi, There are many negative entries on a dataset … | | | poland | 2022-02-23 | 2022-02-24 | poland data now includes reinfections | Thanks to the help of @jbracher and @eMaerthin, we… | | | france | 2022-02-21 | 2022-02-21 | some wrong cases for france in the past two weeks | Hi, I noted some mistakes in the daily cases for F… | | -| germany | 2022-02-01 | 2022-02-01 | official sources for germany | Dear all, since you cite a newspaper as your sour… | | -| germany | 2022-02-01 | 2022-02-01 | discrepancy in germany new cases data of 29th & 30th jan. | For Germany, As per the \[feed\](… | | Open issues updated over the last eight weeks: from [JHU CSSEGISandData Github](https://github.com/CSSEGISandData/COVID-19/) @@ -50,9 +52,9 @@ not consistent across all the countries in the ECDC Forecast Hub. To keep data and forecasts consistent, we include hospitalisations forecasts for the following locations only: - - Belgium, Croatia, Cyprus, Czechia, Denmark, Estonia, France, - Ireland, Latvia, Liechtenstein, Malta, Norway, Slovenia, - Switzerland, United Kingdom + - Belgium, Croatia, Czechia, Denmark, Estonia, France, Ireland, + Latvia, Liechtenstein, Malta, Norway, Slovenia, Switzerland, United + Kingdom ![Plot of truth data from different sources for all countries covered by the forecast hub](plots/hospitalisations.svg) diff --git a/data-truth/plots/revisions-Cases.svg b/data-truth/plots/revisions-Cases.svg index 29d5c80ecd..67b09d0ca0 100644 --- a/data-truth/plots/revisions-Cases.svg +++ b/data-truth/plots/revisions-Cases.svg @@ -1184,7 +1184,7 @@ - + @@ -1903,16 +1903,16 @@ -2022-01-18 -2022-01-25 -2022-02-01 -2022-02-08 -2022-02-15 -2022-02-22 -2022-03-01 -2022-03-08 -2022-03-15 -2022-03-22 -2022-03-29 +2022-01-19 +2022-01-26 +2022-02-02 +2022-02-09 +2022-02-16 +2022-02-23 +2022-03-02 +2022-03-09 +2022-03-16 +2022-03-23 +2022-03-30 diff --git a/data-truth/plots/revisions-Deaths.svg b/data-truth/plots/revisions-Deaths.svg index c714655b3f..209514b58a 100644 --- a/data-truth/plots/revisions-Deaths.svg +++ b/data-truth/plots/revisions-Deaths.svg @@ -1928,16 +1928,16 @@ -2022-01-18 -2022-01-25 -2022-02-01 -2022-02-08 -2022-02-15 -2022-02-22 -2022-03-01 -2022-03-08 -2022-03-15 -2022-03-22 -2022-03-29 +2022-01-19 +2022-01-26 +2022-02-02 +2022-02-09 +2022-02-16 +2022-02-23 +2022-03-02 +2022-03-09 +2022-03-16 +2022-03-23 +2022-03-30 diff --git a/data-truth/plots/revisions-Hospitalizations.svg b/data-truth/plots/revisions-Hospitalizations.svg index 51f4a0e451..c0634d35a8 100644 --- a/data-truth/plots/revisions-Hospitalizations.svg +++ b/data-truth/plots/revisions-Hospitalizations.svg @@ -51,13 +51,13 @@ - + - + - - + + @@ -86,14 +86,14 @@ - - - - + + + + - + - + @@ -161,17 +161,17 @@ - + - - - - - - + + + + + + - - + + @@ -185,29 +185,28 @@ - - - - + + + + - - - - - - - - - - - - - - - + + + + + + + + + + + + + + @@ -272,7 +271,6 @@ - @@ -293,33 +291,33 @@ - - + + - - - + + + - - - - - - - - - - - + + + + + + + + + + + @@ -332,29 +330,17 @@ - - - - + + + - - - - - - - - - - - - - - - - + + + + + @@ -382,7 +368,6 @@ - @@ -498,7 +483,6 @@ - @@ -508,32 +492,32 @@ - - - + + + - - + + - - - - - - - - - - - + + + + + + + + + + + @@ -922,16 +906,15 @@ Oct 2021 Jan 2022 Apr 2022 -Apr 2021 -Jul 2021 -Oct 2021 -Jan 2022 -Apr 2022 -Apr 2021 -Jul 2021 -Oct 2021 -Jan 2022 -Apr 2022 +Apr 2021 +Jul 2021 +Oct 2021 +Jan 2022 +Apr 2022 +Apr +Jul +Oct +Jan Apr 2021 Jul 2021 Oct 2021 @@ -962,8 +945,8 @@ 40 60 0 -200 -400 +200 +400 100 200 300 @@ -990,8 +973,8 @@ 0 4000 8000 -12000 -16000 +12000 +16000 0 500 1000 @@ -1026,16 +1009,16 @@ -2022-01-18 -2022-01-25 -2022-02-01 -2022-02-08 -2022-02-15 -2022-02-22 -2022-03-01 -2022-03-08 -2022-03-15 -2022-03-22 -2022-03-29 +2022-01-19 +2022-01-26 +2022-02-02 +2022-02-09 +2022-02-16 +2022-02-23 +2022-03-02 +2022-03-09 +2022-03-16 +2022-03-23 +2022-03-30