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📊 Ersilia Statistics Report

Last updated: 2025-01-13 09:07:15 GMT

🧬 Models' Impact

  • Total Models: 180
  • Percentage Ready to Use: 84.44%
Model Categorization
Category Count
ADME 28
Descriptor 27
Chemical graph model 22
Toxicity 20
Similarity 16
Embedding 16
Compound generation 14
Fingerprint 13
Metabolism 13
Permeability 13
MoleculeNet 12
Chemical language model 11
Antimicrobial activity 11
ChEMBL 10
Chemical notation 7
Chemical synthesis 7
Solubility 7
IC50 7
Untagged 7
P.falciparum 6
Malaria 6
Cardiotoxicity 6
Human 6
M.tuberculosis 6
Dummy 6
CYP450 5
Antiviral activity 5
Natural product 5
LogP 5
Synthetic accessibility 5
Drug-likeness 5
hERG 5
Bioactivity profile 4
Tuberculosis 4
Lipophilicity 4
COVID19 4
Half-life 4
Sars-CoV-2 3
Quantum properties 3
Microsomal stability 3
Tox21 2
Side effects 2
pKa 2
DrugBank 2
LogS 2
BACE 2
Cancer 2
HIV 2
Alzheimer 2
Fraction bound 2
Target identification 2
Cytotoxicity 2
Papp 2
HBV 1
Mycetoma 1
E.coli 1
ToxCast 1
Antifungal activity 1
Price 1
ZINC 1
Molecular weight 1
LogD 1
Schistosomiasis 1
Therapeutic indication 1
Neglected tropical disease 1
MIC90 1
GPCR 1
ESKAPE 1
HDAC1 1
Rat 1
A.baumannii 1
N.gonorrhoeae 1
Biomedical text 1
Most Recent Models
Title Contributor Date Status
Knowledge-guided pre-trained graph transformer miquelduranfrigola 2024-12-17 In progress
Antimicrobial class specificity prediction miquelduranfrigola 2024-12-17 Ready
MolE molecular embeddings miquelduranfrigola 2024-11-18 In progress
Projections against Coconut miquelduranfrigola 2024-11-10 In progress
Chemical space 2D projections against DrugBank miquelduranfrigola 2024-11-09 In progress

👉 Explore more models on our dashboard

🌍 Community & Blog

  • Countries Represented: 17
  • Total Contributors: 94
Role Distribution
Role Count
Volunteer 49
Intern 28
Trustee 5
Mentor 4
MSc Student 4
OS Maintainer 3
Employee 3
Advisor 2
BSc Student 2
Visiting Researcher 1
Duration of Involvement
Duration Count
< 3 Months 66
3-6 Months 14
> 1 Year 11
6-12 Months 2
Contributors by Country
Country Contributors
United States 50
Nigeria 10
Spain 9
India 7
Australia 3
Colombia 2
Pakistan 2
Poland 2
Kenya 1
Uganda 1
South Africa 1
United Kingdom 1
Cameroon 1
Italy 1
Singapore 1
Serbia 1
Namibia 1

📝 Blogposts

  • Total Blogposts: 46
Blogpost Topics Distribution
Topic Count Percentage
AI/ML in Drug Discovery 14 30.43%
Ersilia Open Source Initiative 12 26.09%
Funding & Partnerships 6 13.04%
Personal Reflections 6 13.04%
Open Science 3 6.52%
Software Development & Tools 3 6.52%
Global Health 2 4.35%
Blogposts Over Time
Year Quarter Post Count
2021 Q2 6
2021 Q3 4
2021 Q4 2
2022 Q1 3
2022 Q2 2
2022 Q3 3
2022 Q4 2
2023 Q1 2
2023 Q2 3
2023 Q3 4
2023 Q4 4
2024 Q1 3
2024 Q2 3
2024 Q3 2
2024 Q4 3

🏢 Organizations in Ersilia's Network

  • Total Organizations: 210
Organization Types
Type Count
Academia 61
Foundation 49
Nonprofit 34
Corporate 31
Pharma 14
Government 11
Accelerator 8
Organizations by Country
Country Total Organizations
United States 102
United Kingdom 25
Spain 23
South Africa 9
Switzerland 8
Germany 5
Cameroon 5
Belgium 5
Brazil 3
Ghana 3
Kenya 2
Zambia 2
Guinea 2
Mexico 1
Austria 1
Australia 1
United Arab Emirates 1
Netherlands 1
Gambia 1
France 1
Japan 1
Italy 1
Zimbabwe 1
Singapore 1
Tanzania 1
Unknown 1

🏅 Author Highlights

  • Total Authors: 222
  • Top Author: Patrick Aloy (H-index: 54)
Top Authors
Name Ersilia Pubs H-index Total Pubs
Patrick Aloy 2 54.0 17
Kelly Chibale 2 39.0 2
Izukanji Sikazwe 2 25.0 2
Patrick Aloy - See Publications ⬇️
Title Year URL
Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque 2022 https://www.nature.com/articles/s41467-022-33026-0
Connecting chemistry and biology through molecular descriptors 2021 https://www.sciencedirect.com/science/article/pii/S1367593121001204?via%3Dihub
Kelly Chibale - See Publications ⬇️
Title Year URL
First fully-automated AI/ML virtual screening cascade implemented at a drug discovery centre in Africa 2023 https://www.nature.com/articles/s41467-023-41512-2
AI coupled to pharmacometric modelling to tailor malaria and tuberculosis treatment in Africa 2024 https://www.medrxiv.org/content/10.1101/2024.11.07.24316884v1
Izukanji Sikazwe - See Publications ⬇️
Title Year URL
Cervical cancer screening outcomes in Zambia, 2010–19: a cohort study 2021 https://www.sciencedirect.com/science/article/pii/S2214109X21000620
Evaluation of kidney function among people living with HIV initiating antiretroviral therapy in Zambia 2022 https://journals.plos.org/globalpublichealth/article?id=10.1371/journal.pgph.0000124

🌐 External Data

Disease Statistics
Disease Estimated Total Cases Estimated Total Deaths
Hivaids 39,210,870 27,580,837
Covid 777,125,657 7,079,912
Malaria 5,803,879,735 15,317,311
Tb 253,467,432 44,118,898
Measles 47,347,773 0
Polio 541,429 0

The full data output that this report is based on can be found in data/ and external-data/. An abbreviated version can be found in reports/table_stats.json.