Compute cross-correlation matrices without matrix inversion #554
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and test ERT and docs | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'version-**' | |
| tags: "*" | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| # We don't cancel on protected branches which codecov uses as a base | |
| cancel-in-progress: ${{ ! github.ref_protected }} | |
| env: | |
| ERT_SHOW_BACKTRACE: 1 | |
| ECL_SKIP_SIGNAL: 1 | |
| jobs: | |
| build-test-cmake: | |
| name: Run C++ tests and coverage | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Ubuntu dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y valgrind | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.conan/ | |
| key: ${{ matrix.os }}-conan-${{ hashFiles('**/CMakeLists.txt') }} | |
| - name: Install dependencies from PyPI | |
| run: | | |
| python3 -m pip install "conan<2" pybind11 ecl | |
| echo "PIP_PKGS_PATH=$(python3 -m pip show conan | grep Location | cut -d ' ' -f 2 | sed -e 's@/lib/.*site-packages$@/bin@')" >> "$GITHUB_ENV" | |
| - name: Build ert clib | |
| run: | | |
| export PATH=$PATH:${{ env.PIP_PKGS_PATH }} | |
| mkdir cmake-build | |
| cmake -S src/clib -B cmake-build -DCMAKE_BUILD_TYPE=Debug -DBUILD_TESTS=ON -DCOVERAGE=ON | |
| cmake --build cmake-build "-j$(nproc)" | |
| - name: Run tests | |
| run: | | |
| cd cmake-build | |
| export PATH=$PWD/bin:$PATH | |
| ctest --output-on-failure | |
| - name: Install gcovr | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| python3 -m pip install gcovr | |
| - name: generate coverage report | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| export PATH=$PATH:${{ env.PIP_PKGS_PATH }} | |
| gcovr -r src/clib/ --gcov-ignore-parse-errors=negative_hits.warn --exclude-directories ".*tests" cmake-build/ --xml -o cov.xml | |
| - name: Upload c coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # fail_ci_if_error: true | |
| files: cov.xml | |
| build-linux: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| uses: ./.github/workflows/build-wheels-linux.yml | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| build-mac: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| uses: ./.github/workflows/build-wheels-macos.yml | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| test-linux: | |
| needs: [build-linux] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test-type: [ 'integration-tests', 'unit-tests', 'gui-test' ] | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| os: [ ubuntu-latest ] | |
| exclude: | |
| - os: ubuntu-latest | |
| python-version: '3.9' | |
| test-type: 'gui-test' | |
| - os: ubuntu-latest | |
| python-version: '3.10' | |
| test-type: 'gui-test' | |
| uses: ./.github/workflows/test_ert.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| python-version: ${{ matrix.python-version }} | |
| test-type: ${{ matrix.test-type }} | |
| test-slurm: | |
| needs: [build-linux] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| uses: ./.github/workflows/test_ert_with_slurm.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| python-version: ${{ matrix.python-version }} | |
| test-mac: | |
| needs: [build-mac] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test-type: [ 'integration-tests', 'unit-tests', 'gui-test' ] | |
| python-version: [ '3.10' ] | |
| os: [ macos-latest ] | |
| uses: ./.github/workflows/test_ert.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| python-version: ${{ matrix.python-version }} | |
| test-type: ${{ matrix.test-type }} | |
| docs-ert: | |
| name: Test ert docs | |
| needs: [build-linux] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.11'] | |
| os: [ubuntu-latest] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: './.github/actions/install_dependencies' | |
| with: | |
| os: ${{ matrix.os }} | |
| - name: Install PlantUML | |
| run: | | |
| sudo apt-get install plantuml | |
| - uses: actions/setup-python@v4 | |
| id: setup_python | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: | | |
| pyproject.toml | |
| - name: Get wheels | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ${{ matrix.os }} Python ${{ matrix.python-version }} wheel | |
| - name: Install wheel | |
| run: | | |
| find . -name "*.whl" -exec pip install "{}[dev]" \; | |
| - name: Make test directory | |
| run: | | |
| mkdir tmp_tests | |
| mv tests tmp_tests/tests | |
| mv test-data tmp_tests/test-data | |
| mkdir tmp_tests/.git | |
| - name: Test docs | |
| run: | | |
| sphinx-build -n -v -E -W ./docs ./tmp/ert_docs | |
| publish: | |
| name: Publish to PyPI | |
| runs-on: ubuntu-latest | |
| needs: [build-test-cmake, test-linux, test-mac, docs-ert] | |
| # If this is a tagged release | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - name: Get wheels | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: artifacts | |
| - name: Move to dist/ | |
| run: | | |
| mkdir dist | |
| find artifacts -name "*.whl" -exec mv '{}' dist/ \; | |
| - name: Publish to PyPI | |
| uses: pypa/[email protected] | |
| with: | |
| user: statoil-travis | |
| password: ${{ secrets.pypi_password }} |